Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 140 3e-28 seq5 134 1e-26 seq4 132 5e-26 seq1 127 2e-24 >seq2 Length=30136903 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||||||||| ||||| | ||||||||||| || |||||||| || Sbjct 19092324 CCGCCACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 19092383 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 19092384 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGG 19092443 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||| | | ||| | || |||| | ||| | Sbjct 19092444 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACC 19092503 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| ||||| ||||| || ||||| |||||||| Sbjct 19092504 TCCAGGGTGATGGTTTTTCCGGTCAGAGTCTTCACGAATATCTGCAT 19092550 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||||||||| ||||| | ||||||||||| || |||||||| || Sbjct 19092552 CCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 19092611 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 19092612 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGG 19092671 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||| | | ||| | || |||| | ||| | Sbjct 19092672 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACC 19092731 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| || || | ||||| || || |||||||| Sbjct 19092732 TCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 19092778 Score = 105 bits (116), Expect = 6e-18 Identities = 242/358 (68%), Gaps = 20/358 (6%) Strand=Plus/Minus Query 51597 TTACATTTAGGCAATAATACCGATAATGCCGCAGCCGAGTCGTCCGCCCGAATTGCCGGT 51656 ||| |||| |||||| || || | |||||||| | || |||| | ||||||||| Sbjct 15750358 TTAGATTTTGGCAATG---CCAATGACACCGCAGCCAATACGGGCGCCGGCATTGCCGGT 15750302 Query 51657 CGTCTTGCTGAGCGGGTGATCGGTTAGGCCTAGGTCGTC-GCGATCGGCGTGCACGACCA 51715 |||||||| ||| |||| | ||| | ||| || ||| |||||||| ||||||| Sbjct 15750301 GGTCTTGCTTAGCTCGTGACCACCCTTGCCCAAGTCATCAGCG-TCGGCGTGGACGACCA 15750243 Query 51716 AACTCCTACCGATCACACTGTACTCACCGAACAGGGACATGACGTTA---TCTATTTTAT 51772 | | || || | |||| |||||||||| | ||| || || | | Sbjct 15750242 CGGTGCGTCCTATGATGCTGTCGGCACCGAACAGCG---TGATCTTCGAGTCGGTGATGC 15750186 Query 51773 CGATGGCGGTGAGGGAGTAGGACGCTTTGGCCTCTATGTTGCCGAGATCGCCCACGTGTC 51832 || ||| ||| || || || |||| |||||||| | ||||||| ||| | Sbjct 15750185 TGACGGCCGTGGGGCTGTCACCGGCC---GCCTGGATGTTGCCCAAGTCGCCCAAGTGGC 15750129 Query 51833 G---CTCGGCGGAGTTGGGTGCGCCGTGGTGTTTGCCAAGGGGATTAAAGTGCTCGCCGG 51889 | ||| ||| |||| || ||||| | ||| |||| |||||||| ||||| Sbjct 15750128 GGTTCTCATCGG---TGGGGGCACCGTGCTCCTTGTTCCGGGGGTTAAAGTGGGGGCCGG 15750072 Query 51890 CGGACGTGCACCCGTTGCTGGTGTCGCCGAACTCGTGCACGTGAAAGCCGTGCAGTCC 51947 ||| |||| |||||| || |||| |||||||||||||| || || ||||||||||| Sbjct 15750071 ACGACATGCAGCCGTTGGTGTTGTCCCCGAACTCGTGCACATGGAATCCGTGCAGTCC 15750014 >seq5 Length=28826359 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| || ||||| || || | |||||||||||| || |||||||| ||| | Sbjct 28457453 CCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 28457512 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| |||||||| || ||| |||| | ||||||||| || || || Sbjct 28457513 AGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 28457572 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | ||| | || || | || ||||| Sbjct 28457573 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 28457632 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || |||||||| ||||| || ||||| Sbjct 28457633 TCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 28457679 Score = 120 bits (132), Expect = 3e-22 Identities = 284/427 (67%), Gaps = 4/427 (1%) Strand=Plus/Minus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 |||||||| || ||||| || || | || || || | | ||| | || | || | Sbjct 15307916 TGATTGACCACTTGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATAT 15307857 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 ||||| || || |||||||| |||| ||||| || || | ||| || ||||| ||| Sbjct 15307856 GGTTCGAATGATTCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCT 15307797 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 || || || ||||| | | |||||||| || |||||||| || || | ||||||| Sbjct 15307796 ACTAACAACGAATTCCTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGCCAATCC 15307737 Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294 ||||| || || | |||||||| || || || | ||| || | ||| | || Sbjct 15307736 CATAGGTTCGTTGGAGTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGA 15307677 Query 145295 CTGCCTTGAAAGGAACTGTAACTGCCCCAA--GTTTTGGCGAGCTCGCAACTCGCCTCCA 145352 || |||| | ||| | | || |||| | || || || || ||||| || || | Sbjct 15307676 CTTCCTTCATAGG--TTTCATATGGACCAAATGCTTGAGCAAGTTCACAACTAGCTTCTA 15307619 Query 145353 GAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCT 145412 |||| || ||||||||||| || ||||| ||| | || ||||| ||||| | Sbjct 15307618 GAGCTCCAAAATAAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTT 15307559 Query 145413 CGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGG 145472 | || || | |||| | | ||||| || || || || || || || | ||||| | Sbjct 15307558 CATAGGGAAAACGCATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTG 15307499 Query 145473 GCCGATG 145479 | ||||| Sbjct 15307498 GACGATG 15307492 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || |||||||| | ||| |||||||| |||||||| ||||| | Sbjct 15755891 CCACCACGAAGCCGAAGTACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGAC 15755950 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | |||||||| ||| |||| |||||||| || || ||||| Sbjct 15755951 AGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGA 15756010 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||||||||| ||| || |||| | || | ||||| | | |||| Sbjct 15756011 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGACC 15756070 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || ||||| || ||||| || ||||||||| Sbjct 15756071 TCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCATG 15756118 >seq4 Length=20862834 Score = 132 bits (146), Expect = 5e-26 Identities = 471/720 (65%), Gaps = 32/720 (4%) Strand=Plus/Minus Query 45787 TGGAAGGTGGAGGAGGTGGATTTGTCGAAAGACTGCGATG-ACTT--CACGTCTAAATTG 45843 |||| ||||| ||||||||| | ||||| ||| |||| | ||| | ||||| | | Sbjct 15863256 TGGACCGTGGAAGAGGTGGATCTATCGAAGGAC-GCGACGGACTGGGCCCGTCTCACT-- 15863200 Query 45844 AACGATGACGAGCGCTATTTTATAAAGCACGTGTTAGCtttttttGCGGCCGCCGACAGC 45903 || |||||||||| ||||| || ||| |||| || || || ||| | ||| || Sbjct 15863199 ---GACAACGAGCGCTACTTTATCTCCCATGTGCTAGCCTTCTTCGCTGCCTCGGACGGC 15863143 Query 45904 ATTGTCAACATTAATTTGATCGAGTACATGCAGCAGAACGTGCCGGAGCTAGAGGCGCAA 45963 ||||| ||| ||| || ||||| | | ||| | |||| | ||||| | Sbjct 15863142 ATTGTTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGATCACGGAGGCACGT 15863083 Query 45964 TACTTTTACAACCAGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATTTGTTA 46023 | ||| ||| | || | ||| ||| |||||| | |||||||||| || | Sbjct 15863082 TGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGATGTACAGCGTGCTC 15863023 Query 46024 ATTCACCAGTTGATTTCGGACGAACACGAGCGCGACACGCTGCTTAATGCGTTTGAACGT 46083 ||| || | || ||| || ||||||||| || | ||||| |||| Sbjct 15863022 ATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTCAATGCTATTGAGACC 15862963 Query 46084 ATGCCGTGCGT---GCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACC 46140 |||||| || ||||||| | |||||||| ||| ||||| | | | | | Sbjct 15862962 ATGCCGGCTGTAAAGCGCAAGG---CGGACTGGGCCATGTCCTGGAT-ATCCTCGAAATC 15862907 Query 46141 G--CGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTG 46198 | | ||||| ||||||||||| | ||||||||| ||||| || |||| ||| | Sbjct 15862906 GGCCAACTTT-GCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGCG 15862848 Query 46199 GCAGTTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTT 46257 |||| |||||| | ||||||| | || || | || | |||||||||| ||||| || Sbjct 15862847 GCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTC-TCATGCCCGGTCTGACCTTC 15862789 Query 46258 AGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTAT 46317 |||||||||||| || || ||||| || || || ||||||||| ||| ||| Sbjct 15862788 TCCAACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGGTGCTCATGTAT 15862729 Query 46318 AACACTCGCGTGCA-CG--ACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAG 46374 || || ||||| || ||||| | || | || || | || ||| ||| Sbjct 15862728 CACCATCTAGTGCAGCGGCCCAAGCGGGAGCGCATCATCGAG------ATCATCAGGGAT 15862675 Query 46375 GCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATG 46434 || |||| || ||| ||||||| | || | || ||||||| || | |||||| Sbjct 15862674 GCTGTGGAAATCGAGCAGGAGTTCCTCACTGAAGCCCTGCCCGTCAATTTGATTGGCATG 15862615 Query 46435 AAC-GCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT 46493 ||| | || |||| | | ||||||||||| || || || || ||||| | | |||| Sbjct 15862614 AACTGTGTTCTC-ATGTCCCAGTACATCGAGTTCGTGGCCGATCGGCTGCTAGGGGAGCT 15862556 >seq1 Length=22123056 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||||| || || || | || |||||||| || |||||||| ||| Sbjct 6630582 GCCGCCACGAAGACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGA 6630523 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || |||||| ||||||||||| ||| |||| ||||||||||| || || || Sbjct 6630522 CAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 6630463 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||||| | ||| | || || | || ||| | Sbjct 6630462 AATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAAC 6630403 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || || ||||| |||||||||||||| Sbjct 6630402 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 6630355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012764599040