Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq2 116 3e-21
seq1 100 2e-16
seq5 84.2 2e-11
>seq2
Length=30136903
Score = 116 bits (128), Expect = 3e-21
Identities = 168/235 (71%), Gaps = 4/235 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | ||| |||| ||| || || |||||||| || ||||||||||| |
Sbjct 19092552 CCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 19092611
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | ||||||| || ||||| || | || || ||||| ||||| ||
Sbjct 19092612 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGG 19092671
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| || || || |||||| | | | |||||| ||||||
Sbjct 19092672 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCGGATGGCTCCA 19092729
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTA 16941
|||| ||||||||||||||| |||| ||||| ||||| ||||||||||||||
Sbjct 19092730 CCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTGTA 19092784
Score = 107 bits (118), Expect = 2e-18
Identities = 182/258 (71%), Gaps = 8/258 (3%)
Strand=Plus/Plus
Query 16681 AAATGTATTATTGTTTAGCCGCATTTAC-CCTCCTCGTAGCCTCAGTACCATATGCAGCG 16739
||||||| || | |||| |||| || || || || || | ||| |||| ||| || |
Sbjct 19092298 AAATGTAGTAA-GATTAGGCGCAG--ACTCCGCCACGGAGACGCAGCACCAAATGGAGAG 19092354
Query 16740 TGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCG 16799
| |||||||| || ||||||||||| | | || | | ||||||| || ||||| |
Sbjct 19092355 TCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCAG 19092414
Query 16800 CATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTT 16857
| | || || ||||| ||||| || | ||||| ||||| || || || |||
Sbjct 19092415 CGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGC--CTT 19092472
Query 16858 CACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGT 16917
||| | | | |||||| |||||| |||| ||||||||||||||||||||| ||
Sbjct 19092473 CACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCGGTCAGAGT 19092532
Query 16918 TTTGACAAAAATCTGCAT 16935
|| || || ||||||||
Sbjct 19092533 CTTCACGAATATCTGCAT 19092550
>seq1
Length=22123056
Score = 100 bits (110), Expect = 2e-16
Identities = 163/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | || ||||| |||| ||||||||||| || ||||||||||||| |
Sbjct 6630581 CCGCCACGAAGACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 6630522
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || ||||||||| || ||||| || | || | ||||| || || ||
Sbjct 6630521 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 6630462
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| |||||| ||||| || || || ||| || | | | ||||| ||||||
Sbjct 6630461 ATGCCCTCCTTGTCCTGGATCTTAGC--CTTGACATTCTCGATGGTGTCCGAGGGCTCAA 6630404
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|| | ||||||||| || || ||||| ||||| || |||||||||||||||
Sbjct 6630403 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCATTTTG 6630351
>seq5
Length=28826359
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/217 (69%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| || |||||||| || ||||||||||||| || || | | |||
Sbjct 28457468 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 28457527
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| || || || || | || || ||||| || || || | |||||| |||||
Sbjct 28457528 TCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 28457587
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || ||| || | | | ||||| |||||| |||| ||||||||
Sbjct 28457588 TGGATCTTAGC--CTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGG 28457645
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938
| || || || || ||||| || || || ||||||||
Sbjct 28457646 TCTTGCCAGTGAGAGTTTTCACGAAGATTTGCATTTT 28457682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405087970377940
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |