Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 1e-18
seq2 91.5 1e-13
seq5 82.4 5e-11
>seq1
Length=22123056
Score = 107 bits (118), Expect = 1e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161
|||||| ||||| || | |||| |||||| || || ||||| || |||||| |||| |
Sbjct 6630570 ACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCC 6630511
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
||| || | || || ||||| || || | || || ||||| | ||| | ||| || ||
Sbjct 6630510 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTT 6630451
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281
|||| || || ||| ||||||| || || || ||||| || | || ||
Sbjct 6630450 GTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGAT 6630391
Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| || || |||| |||||||||||| |||||||| ||
Sbjct 6630390 GGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCATTTT 6630352
>seq2
Length=30136903
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||||| ||||||||| ||||| |||||| || || ||||| || |
Sbjct 19092550 TACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 19092609
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | | || | || || | || || ||||| || || || || || || || | ||
Sbjct 19092610 AAAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGG 19092669
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || |||||| || || |||||| |||| | || || || |
Sbjct 19092670 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCA 19092729
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323
| || | || || ||||| || |||||||||||||| || |||||||| || ||
Sbjct 19092730 CCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTGTA 19092784
>seq5
Length=28826359
Score = 82.4 bits (90), Expect = 5e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|| ||||| | ||| |||||| ||||| || |||||||||| || | || ||
Sbjct 15755909 ACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCC 15755968
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
||||| || || || || || | || |||||||| | || | ||||||||||||
Sbjct 15755969 AATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGG 15756028
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|| || || ||||| | || ||||| | ||| || || | || || || ||
Sbjct 15756029 ATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTTATGGTCTTG 15756088
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323
||||| | ||| || || || ||||||||| ||||
Sbjct 15756089 CCCGTTAGGGTCTTTACAAAGATCTGCATGGTTTA 15756123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334947175506986
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |