Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4 118 9e-22 seq5 104 2e-17 >seq4 Length=20862834 Score = 118 bits (130), Expect = 9e-22 Identities = 206/298 (69%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 50982 CACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTT 51041 ||||| ||||| ||||| || || |||||||| || | || | || || || Sbjct 9425555 CACGTCGAACTTGCGCTTGCATCCTTGATAGTTCATGTAGCGAATCTTTCCGAATATCGC 9425614 Query 51042 GCGTTCTTTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATT 51101 || || || | | | ||||| | || | ||| |||||||| || |||||||| Sbjct 9425615 TCGCTCCTTCCAGCCCATATCGTGTATGCCCCCAATGGACCACATGCAGCCCACATAGCC 9425674 Query 51102 GTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGC 51161 || |||||||| || || | |||||| | ||||| || | || || || ||| || Sbjct 9425675 ATTGGGATCGCGCCCGTCTAGGCTGTACTTGTCGTTCAGCAGGATCGCGTACTCCAGCGC 9425734 Query 51162 CATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACC 51221 | || | | | |||||| || | ||||||||||||||||||||||| | | || Sbjct 9425735 CTGCTCCGGCGTGGCCGTCCACTCGAGTATTTTCTTGGCCCAGTACATGCGAAGAAATCC 9425794 Query 51222 GTGCATCTTGCC--CTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277 |||||||||||| |||||| | |||||| || || |||||||||| || |||| Sbjct 9425795 GTGCATCTTGCCCTCTCGCACC--AGCTGCAGCTGGGCAGAGTTCCACAGGTCATCGT 9425850 >seq5 Length=28826359 Score = 104 bits (114), Expect = 2e-17 Identities = 160/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| ||||| || ||||||||||| | || || || |||| || | || || || | Sbjct 15756121 AACCATGCAGATCTTTGTAAAGACCCTAACGGGCAAGACCATAACTCTTGAGGTCGAACC 15756062 Query 25055 GTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 || || || ||||| |||| |||| || | || ||||||||||| ||||| | Sbjct 15756061 TTCGGATACCATCGAAAATGTCA---AAGCCAAGATCCAG-GACAAAGAAGGAATTCCTC 15756006 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | || |||||||| | || || || ||||| ||||| ||||||| || || || | Sbjct 15756005 CAGATCAACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACACTGTCTG 15755946 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||| || ||||| || || ||||| | |||||||| || |||| Sbjct 15755945 ATTATAACATTCAGAAGGAGTCCACCTTGCATTTAGTACTTCGGCT 15755900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327968312890