Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq4 118 9e-22
seq5 104 2e-17
>seq4
Length=20862834
Score = 118 bits (130), Expect = 9e-22
Identities = 206/298 (69%), Gaps = 4/298 (1%)
Strand=Plus/Plus
Query 50982 CACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTT 51041
||||| ||||| ||||| || || |||||||| || | || | || || ||
Sbjct 9425555 CACGTCGAACTTGCGCTTGCATCCTTGATAGTTCATGTAGCGAATCTTTCCGAATATCGC 9425614
Query 51042 GCGTTCTTTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATT 51101
|| || || | | | ||||| | || | ||| |||||||| || ||||||||
Sbjct 9425615 TCGCTCCTTCCAGCCCATATCGTGTATGCCCCCAATGGACCACATGCAGCCCACATAGCC 9425674
Query 51102 GTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGC 51161
|| |||||||| || || | |||||| | ||||| || | || || || ||| ||
Sbjct 9425675 ATTGGGATCGCGCCCGTCTAGGCTGTACTTGTCGTTCAGCAGGATCGCGTACTCCAGCGC 9425734
Query 51162 CATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACC 51221
| || | | | |||||| || | ||||||||||||||||||||||| | | ||
Sbjct 9425735 CTGCTCCGGCGTGGCCGTCCACTCGAGTATTTTCTTGGCCCAGTACATGCGAAGAAATCC 9425794
Query 51222 GTGCATCTTGCC--CTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277
|||||||||||| |||||| | |||||| || || |||||||||| || ||||
Sbjct 9425795 GTGCATCTTGCCCTCTCGCACC--AGCTGCAGCTGGGCAGAGTTCCACAGGTCATCGT 9425850
>seq5
Length=28826359
Score = 104 bits (114), Expect = 2e-17
Identities = 160/226 (71%), Gaps = 8/226 (4%)
Strand=Plus/Minus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
||| ||||| || ||||||||||| | || || || |||| || | || || || |
Sbjct 15756121 AACCATGCAGATCTTTGTAAAGACCCTAACGGGCAAGACCATAACTCTTGAGGTCGAACC 15756062
Query 25055 GTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110
|| || || ||||| |||| |||| || | || ||||||||||| ||||| |
Sbjct 15756061 TTCGGATACCATCGAAAATGTCA---AAGCCAAGATCCAG-GACAAAGAAGGAATTCCTC 15756006
Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170
| || |||||||| | || || || ||||| ||||| ||||||| || || || |
Sbjct 15756005 CAGATCAACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACACTGTCTG 15755946
Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|||| || ||||| || || ||||| | |||||||| || ||||
Sbjct 15755945 ATTATAACATTCAGAAGGAGTCCACCTTGCATTTAGTACTTCGGCT 15755900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327968312890
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |