Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4 232 7e-56 seq3 116 4e-21 >seq4 Length=20862834 Score = 232 bits (256), Expect = 7e-56 Identities = 529/786 (67%), Gaps = 19/786 (2%) Strand=Plus/Plus Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802 |||||||| || || || ||||| || ||||| | || || | | ||||| ||| Sbjct 15862391 TAGAAATCGGCGTCAAGGGTAAACACGTTGTCTAAGCGACTCGTT---ACGACACC-CAT 15862446 Query 92803 TTT-TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||||| || | || || || |||||||| ||||||||||| |||| || ||| Sbjct 15862447 GCGCTGGTACTCGGCCACCTTCTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCAT 15862506 Query 92862 ATTCACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTC---ACCGATCAACTCGTA 92916 | || | ||| |||||||| | ||| || ||| | ||||| | | | Sbjct 15862507 CTCCATGAAATTGAAAGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAG 15862566 Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 || | ||| || || || || |||||||| ||||| | | |||| ||||| || | Sbjct 15862567 CAGC---CGATCGGCCACGAACTCGATGTACTGGGACATGAGAACACAGTTCATGCCAAT 15862623 Query 92977 AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036 | | || || || || || || | ||| || | ||||||| | || || || | | Sbjct 15862624 CAAATTGACGGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTTCCACAGCATCCCTGAT 15862683 Query 93037 GATTTCTATTA--CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC 93094 ||| || || | | || | |||| | || || | || | ||||| | |||| Sbjct 15862684 GATCTCGATGATGCGCTCCCGCTTGG--GCCGCTGCACTAGATGGTGATACATGA-GCAC 15862740 Query 93095 -GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACC 93153 ||||||||| || | ||||||||| || || |||| ||| ||| ||| || | ||| Sbjct 15862741 CGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACC 15862800 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTAT 93213 || | || || || ||||| |||||||| || || ||||| || || ||| || || Sbjct 15862801 GGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTAAAGAAGAT 15862860 Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGAT 93273 ||||||||||| ||||| || | |||||| |||||||| || || || || | || Sbjct 15862861 TCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATAT 15862920 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 ||| | ||||| || || || ||| | | || | || || ||||| || || Sbjct 15862921 CCAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAA 15862980 Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393 | ||| || ||||| | || || |||||||| || || || | || ||||| || Sbjct 15862981 CAAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTC 15863040 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 || || ||||||||||| || || ||||| |||||||| || | || ||||||||||| Sbjct 15863041 GGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCCGTGATCTG 15863100 Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 ||| || ||| ||| | ||| || ||||| || || || || || || || || || || Sbjct 15863101 CACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAA 15863160 Query 93514 aaaaGC 93519 || || Sbjct 15863161 GAAGGC 15863166 >seq3 Length=33007066 Score = 116 bits (128), Expect = 4e-21 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 18284332 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 18284273 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||| Sbjct 18284272 GTGGGTTCGAACCCCACACCTGACAA 18284247 Score = 104 bits (114), Expect = 3e-17 Identities = 74/84 (88%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||| ||||||||| |||||||||||||||||||||| |||||||| | | ||||| Sbjct 18287061 GTCAGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGCG 18287002 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 18287001 TGGGTTCGAACCCCACATCTGACA 18286978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860758235440