Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5 251 6e-62 seq2 114 1e-20 seq1 105 6e-18 >seq5 Length=28826359 Score = 251 bits (278), Expect = 6e-62 Identities = 1009/1565 (64%), Gaps = 43/1565 (3%) Strand=Plus/Minus Query 128778 CTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCC 128837 |||||| || ||||||| || |||| || || || || ||||| ||||||||||| || Sbjct 15308262 CTTGTCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCC 15308203 Query 128838 TGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGG 128897 ||||| | || |||||| | | | || || | ||||| | ||||| |||| Sbjct 15308202 GGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGG 15308143 Query 128898 TTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGC 128957 | | || |||||| || ||||||||||||||||| | || | ||| ||||| Sbjct 15308142 CTCTGCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGC 15308083 Query 128958 CATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTG 129017 ||| ||| ||| ||| |||||||| || ||||| ||||| || | || | Sbjct 15308082 CATTTTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCGAACCTT 15308023 Query 129018 TTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCAT 129077 || || || |||||| | || | | ||| || | | ||| ||||| ||| ||| Sbjct 15308022 TTGGGGAATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAAATTATTTTATTTTTCAT 15307963 Query 129078 CTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATT----A 129133 || || | | || | || | | ||||| |||| || || | ||| | Sbjct 15307962 CTCATCATCCCATAAGTCCAACTCTGTTAAATCCC---TCAA-TAAATGATGATTGACCA 15307907 Query 129134 CTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACG 129193 ||||||| ||||| | || || || | ||||| || |||| | || || || | Sbjct 15307906 CTTGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATG 15307847 Query 129194 ATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCG 129253 |||| || || || | ||||| || || | || || ||||| || || | | || Sbjct 15307846 ATTCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACG 15307787 Query 129254 AGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATG 129313 | || | | ||||||| ||||||||||| ||| | | ||| ||||| | | Sbjct 15307786 AATTCCTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGCCAATCCCATAGGTTCG 15307727 Query 129314 TGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGT 129373 | || || | || ||||| || ||||| | || || || | ||||| | Sbjct 15307726 TTGGAGTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGACTTCCTTCAT 15307667 Query 129374 AGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAAT 129433 ||| || | || | |||| || | ||| ||||| ||||| | || ||||||| Sbjct 15307666 AGGTTTCATATGGACCAAATGCTTGAGCAAGTTCACAACTAGCTTCTAGAGCTCCAAAAT 15307607 Query 129434 AAATTGTTTCGGCAATTT--TGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCAT 129491 |||||||||| |||| |||| | || || ||| | |||||||| || || | Sbjct 15307606 AAATTGTTTCAAATATTTGTTGGTTTAAAAGACC--GGCTTCTTCGCTTTCATAGGGAAA 15307549 Query 129492 ACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTT 129551 ||||| | || | ||| || | |||||||||||| | |||||| || ||||| | Sbjct 15307548 ACGCATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCCT 15307489 Query 129552 TCTATTGGATTT-TTG--TGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTT 129608 | |||||| || ||| | | | ||| |||| || ||||||||||||||||||||||| Sbjct 15307488 TAAATTGGACTTCTTGGCTTCTGGCAA--AGGG-TAATAGTTGATGTCTATAATTTTGTT 15307432 Query 129609 TAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTAC 129668 | ||| ||| | ||| |||| ||||| | |||||| ||| |||| ||| | | Sbjct 15307431 AAGATTTTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTTC 15307372 Query 129669 ATCGATGTCG-ACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGT 129727 | | || ||| || | || || || || ||||||||||| || | || | Sbjct 15307371 TGCTGTTACGAACATGTTCAGTG----CTATTGAAGCTAAATTGCAGACAGCGATCTCAT 15307316 Query 129728 TTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAAT 129787 | ||||||||||||||| | || |||||||| |||||| ||||| | || Sbjct 15307315 CAGGTGCTGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACAT 15307256 Query 129788 GCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTT 129847 | |||||| || || | ||||| | ||| || | | |||||| || | || |||| Sbjct 15307255 TTTGTTGATTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTT 15307196 Query 129848 CGACTTGCGTTTCGACAATGG---TCCTGAACAAGTCTCGAGCCTTGATCTGT--CTTAC 129902 | ||||||| ||| | ||||| || | ||| || | ||| |||| | | Sbjct 15307195 CCACTTGCGATTCTATAATGGCAAACC--ATAAAGCCT--GGGCTTCCACTGTTCGATTC 15307140 Query 129903 AAATTTGCCACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGT 129962 | | || || ||| ||| ||||| |||| |||||||| | ||| || | Sbjct 15307139 GCACGT-CCTTCTTGCTCATATTTGACATAGAGTTCTTCAAATTTTTCGCCCCAAAC-AT 15307082 Query 129963 GTCGA--GCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACT 130020 | || || | || ||| | | ||||||||||| ||| || ||| || || || Sbjct 15307081 CTTGAAGGCCA-GGACATTTATGTGGACACATCAATGACCAGCTTTCATTTGCCTCAACA 15307023 Query 130021 CGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCC 130080 |||||||| || | ||| || | ||| | ||||| || | ||| || ||| | || Sbjct 15307022 CGTTTCATGAAAAGATCAGGAATCCATAAAGCGTAAAAAAGATCACGTGCTCGGTTTTCT 15306963 Query 130081 TCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCA 130140 || || |||| | ||| || || | || || ||| || | ||||| || || Sbjct 15306962 TCTTTTCCAGTGTTTCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCT 15306903 Query 130141 ACATAAATTGCCATTGCGCCCTTCCGTTTGCCCCCT---TGGTCAACGTGGCGCACGGCA 130197 | |||||| || | || || | ||| || ||| || ||||| | || | || Sbjct 15306902 AAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGAGCCACA 15306843 Query 130198 TTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCA-AT 130256 || || | |||| ||||||| | ||||| || | ||| ||||| || | | || || Sbjct 15306842 TTATTAAAAACTCTTAACATTGGAACTAATCCATTCGACGTACCGTTCGTTC-CACATAT 15306784 Query 130257 GAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGA 130316 || |||| ||| |||| | |||||| |||| || || || || | |||| || Sbjct 15306783 TGAAGTGCCTTTAGCACGAATGCAATGAAC-ATTAGTCCGATTCCACCTGCTGATTTGGA 15306725 Query 130317 TATCA 130321 |||| Sbjct 15306724 AATCA 15306720 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || || |||||| | || || || || |||| | || || || || Sbjct 28457682 AAAATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCC 28457623 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || || ||||||||||| ||||| || ||| Sbjct 28457622 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 28457563 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || ||||| || ||| | |||||| |||||| | ||||| ||| Sbjct 28457562 CAGCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 28457503 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || ||| | || || || | || ||||||| ||| Sbjct 28457502 AACATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGCGGTGGT 28457452 >seq2 Length=30136903 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| ||||| || || || ||||| |||| || || ||||| | Sbjct 19092781 AAAATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAGCCA 19092722 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | || | | || || || || ||||||||||| || || || || Sbjct 19092721 TCCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGAC 19092662 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | |||||| |||||| | || || ||| Sbjct 19092661 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTAC 19092602 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || || | ||||| || |||| | ||||| ||| Sbjct 19092601 AACATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCGTCTCCGCGGTGGT 19092551 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| ||||| |||| || || ||||| | || Sbjct 19092550 ATGCAGATATTCGTGAAGACTCTGACCGGAAAAACCATCACCCTGGAGGTGGAGCCATCC 19092491 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| || || || || || Sbjct 19092490 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 19092431 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | |||||| |||||| | || || |||||| Sbjct 19092430 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAAC 19092371 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || || || | ||||| || |||| Sbjct 19092370 ATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCG 19092336 >seq1 Length=22123056 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || ||||| | || || || || |||| || || || || || Sbjct 6630352 AAAATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCC 6630411 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || || ||||||||||| ||||| || ||| Sbjct 6630412 TCGGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 6630471 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||| | || || |||||||| ||| | ||||| || || | ||||| ||| Sbjct 6630472 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTAC 6630531 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| || || || ||||| | || || || ||||| Sbjct 6630532 AACATCCAGAAGGAGTCCACTTTGCACTTGGTATTGCG 6630569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727969307390