Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5 178 2e-39 seq2 174 3e-38 seq1 170 4e-37 seq3 84.2 4e-11 >seq5 Length=28826359 Score = 178 bits (196), Expect = 2e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | |||||||| || || ||||| || |||||||| || ||||| Sbjct 28457453 CCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 28457512 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || || || || ||| Sbjct 28457513 AGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 28457572 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| |||||||| |||||||||||| | | || || Sbjct 28457573 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 28457632 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||||||||| || || ||||| || || ||||| || |||||| Sbjct 28457633 TCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCATT 28457680 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || ||||| || | ||| || || | |||||||| || || ||||||||||| || Sbjct 15755890 TCCACCACGAAGCCGAAGTACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGA 15755949 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||||| | |||||||| || ||||| || ||||| || | | ||||| || || || Sbjct 15755950 CAGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGG 15756009 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| ||||| ||||| || ||||| || ||||| |||||||| || | | ||| || Sbjct 15756010 AATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGAC 15756069 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| || ||||| |||||||| || || |||||||| Sbjct 15756070 CTCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCAT 15756117 Score = 93.3 bits (102), Expect = 8e-14 Identities = 198/294 (67%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 176239 GTGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATT 176298 ||||||| || || | ||| |||| ||||||||| || || || | ||| || | Sbjct 597160 GTGTGAAAATGTAACGAGCGCTGGCACAGTCCTTGCCGCCCGTCAGCCGAGTACCAAACT 597219 Query 176299 GTCCGCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCA--TTCC 176356 | ||||| || ||||| |||||||| |||||||| ||||||| ||||||| ||| Sbjct 597220 GACCGCGCGGCTCCAGCAAGTTGATGTTGTTCGAACCAACGTAGTTCTGGGCCAGATTC- 597278 Query 176357 GACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTA 176416 || |||| |||||| || ||||||||||||| ||| | | |||| | | Sbjct 597279 -ACGATGGTCATCTGGAGGGAGACCTCGCCGTGGTGGTAGGCCGACATCTCCGCCACGGA 597337 Query 176417 TCCGGCAAACTGCGCGACTTTGATTTCTTGTACGAGGTTGCGCTTCAACGCCGAGAACAG 176476 || | | ||| || || || | || | | ||||||||| || | ||||| Sbjct 597338 GCCAGACAGCTGGGCCACCTTCACCTCGCGCTTGTCGTTGCGCTTGAAGCAAGTGAACAT 597397 Query 176477 AATCTTCCGCTGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACGCTC 176530 | ||| ||||| ||||||||| ||||| || | || ||||| ||||| Sbjct 597398 GACCTTGCGCTGGCCGGGCTTCAGGCCATCCACCAGGCTGGGGATGGAGCGCTC 597451 >seq2 Length=30136903 Score = 174 bits (192), Expect = 3e-38 Identities = 182/238 (76%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || |||| ||||| || || || ||||| || |||||||| || || || Sbjct 19092552 CCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 19092611 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| ||||| | || ||||| || || Sbjct 19092612 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGG 19092671 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||| ||| ||| |||||||| | || || || Sbjct 19092672 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACC 19092731 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTATTAT 68472 |||| ||||||||||||||| || | ||| || || || ||||||||| || |||||| Sbjct 19092732 TCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTG-TATTAT 19092788 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || || |||| ||||| || || || ||||| || |||||||| || || || Sbjct 19092323 TCCGCCACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 19092382 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | ||||| || | |||||| || ||||| ||||| | || ||||| || || Sbjct 19092383 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGG 19092442 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || || |||||||| || ||||| ||||| ||| ||| |||||||| | || || || Sbjct 19092443 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCAC 19092502 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||||||||| || || ||||| |||||||||||||| Sbjct 19092503 CTCCAGGGTGATGGTTTTTCCGGTCAGAGTCTTCACGAATATCTGCAT 19092550 >seq1 Length=22123056 Score = 170 bits (188), Expect = 4e-37 Identities = 180/236 (76%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| |||||||||||||| | |||||||| || |||||||| || ||||| Sbjct 6630581 CCGCCACGAAGACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 6630522 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| |||||||| || | | || || || || ||| Sbjct 6630521 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 6630462 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| |||||||| |||||||||||| | | || || Sbjct 6630461 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACC 6630402 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT-GCTAT 68469 || | ||||||||| || || || ||||| || ||||| ||||||||| | ||||| Sbjct 6630401 TCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCATTTTGGCTAT 6630346 >seq3 Length=33007066 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 196592 ACGGAAACATTTGCGATGGGCGTCAACGGGCCTGCGAGGACCGTCGTCTTCGAGTCGCTC 196651 || ||||| || |||||||||||||| ||| || | ||||| || || || |||| | Sbjct 19579561 ACCGAAACCTTCTCGATGGGCGTCAACATGCCCGCCCGCACCGTGGTTTTTGATTCGCAC 19579620 Query 196652 GAGAAGTTCGATGGACACGAGCGCCGCATGTTCCAGCCGCACGAGTTCATCCAAATGGCG 196711 |||| ||||| || | ||| |||| || ||||| ||||| ||| || ||||| Sbjct 19579621 AAGAAATTCGACGGCCTGGAGGTGCGCAATCTCAAGCCGGGCGAGTACATACAGATGGCT 19579680 Query 196712 GGCCGGGCCGGGCGCCGAGGG 196732 || || ||||| ||||| ||| Sbjct 19579681 GGTCGAGCCGGTCGCCGTGGG 19579701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622330878320