Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq5 178 2e-39
seq2 174 3e-38
seq1 170 4e-37
seq3 84.2 4e-11
>seq5
Length=28826359
Score = 178 bits (196), Expect = 2e-39
Identities = 176/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| ||||| | |||||||| || || ||||| || |||||||| || |||||
Sbjct 28457453 CCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 28457512
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| |||||||| || || | || || || || |||
Sbjct 28457513 AGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 28457572
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| |||||||| |||||||||||| | | || ||
Sbjct 28457573 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 28457632
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|||||||||||||| || || ||||| || || ||||| || ||||||
Sbjct 28457633 TCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCATT 28457680
Score = 150 bits (166), Expect = 3e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293
||| || ||||| || | ||| || || | |||||||| || || ||||||||||| ||
Sbjct 15755890 TCCACCACGAAGCCGAAGTACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGA 15755949
Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353
||||| | |||||||| || ||||| || ||||| || | | ||||| || || ||
Sbjct 15755950 CAGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGG 15756009
Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413
||| ||||| ||||| || ||||| || ||||| |||||||| || | | ||| ||
Sbjct 15756010 AATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGAC 15756069
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || ||||| || ||||| |||||||| || || ||||||||
Sbjct 15756070 CTCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCAT 15756117
Score = 93.3 bits (102), Expect = 8e-14
Identities = 198/294 (67%), Gaps = 4/294 (1%)
Strand=Plus/Plus
Query 176239 GTGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATT 176298
||||||| || || | ||| |||| ||||||||| || || || | ||| || |
Sbjct 597160 GTGTGAAAATGTAACGAGCGCTGGCACAGTCCTTGCCGCCCGTCAGCCGAGTACCAAACT 597219
Query 176299 GTCCGCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCA--TTCC 176356
| ||||| || ||||| |||||||| |||||||| ||||||| ||||||| |||
Sbjct 597220 GACCGCGCGGCTCCAGCAAGTTGATGTTGTTCGAACCAACGTAGTTCTGGGCCAGATTC- 597278
Query 176357 GACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTA 176416
|| |||| |||||| || ||||||||||||| ||| | | |||| | |
Sbjct 597279 -ACGATGGTCATCTGGAGGGAGACCTCGCCGTGGTGGTAGGCCGACATCTCCGCCACGGA 597337
Query 176417 TCCGGCAAACTGCGCGACTTTGATTTCTTGTACGAGGTTGCGCTTCAACGCCGAGAACAG 176476
|| | | ||| || || || | || | | ||||||||| || | |||||
Sbjct 597338 GCCAGACAGCTGGGCCACCTTCACCTCGCGCTTGTCGTTGCGCTTGAAGCAAGTGAACAT 597397
Query 176477 AATCTTCCGCTGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACGCTC 176530
| ||| ||||| ||||||||| ||||| || | || ||||| |||||
Sbjct 597398 GACCTTGCGCTGGCCGGGCTTCAGGCCATCCACCAGGCTGGGGATGGAGCGCTC 597451
>seq2
Length=30136903
Score = 174 bits (192), Expect = 3e-38
Identities = 182/238 (76%), Gaps = 1/238 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || |||| ||||| || || || ||||| || |||||||| || || ||
Sbjct 19092552 CCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 19092611
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| |||||||| ||||| | || ||||| || ||
Sbjct 19092612 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGG 19092671
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| ||||| ||| ||| |||||||| | || || ||
Sbjct 19092672 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACC 19092731
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTATTAT 68472
|||| ||||||||||||||| || | ||| || || || ||||||||| || ||||||
Sbjct 19092732 TCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTG-TATTAT 19092788
Score = 172 bits (190), Expect = 1e-37
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293
||| || || || |||| ||||| || || || ||||| || |||||||| || || ||
Sbjct 19092323 TCCGCCACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 19092382
Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353
|| || | ||||| || | |||||| || ||||| ||||| | || ||||| || ||
Sbjct 19092383 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGG 19092442
Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413
|| || |||||||| || ||||| ||||| ||| ||| |||||||| | || || ||
Sbjct 19092443 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCAC 19092502
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| ||||||||||||||| || || ||||| ||||||||||||||
Sbjct 19092503 CTCCAGGGTGATGGTTTTTCCGGTCAGAGTCTTCACGAATATCTGCAT 19092550
>seq1
Length=22123056
Score = 170 bits (188), Expect = 4e-37
Identities = 180/236 (76%), Gaps = 1/236 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| |||||||||||||| | |||||||| || |||||||| || |||||
Sbjct 6630581 CCGCCACGAAGACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 6630522
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | || || || | |||||| |||||||| || | | || || || || |||
Sbjct 6630521 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 6630462
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| |||||||| |||||||||||| | | || ||
Sbjct 6630461 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACC 6630402
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT-GCTAT 68469
|| | ||||||||| || || || ||||| || ||||| ||||||||| | |||||
Sbjct 6630401 TCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCATTTTGGCTAT 6630346
>seq3
Length=33007066
Score = 84.2 bits (92), Expect = 4e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 196592 ACGGAAACATTTGCGATGGGCGTCAACGGGCCTGCGAGGACCGTCGTCTTCGAGTCGCTC 196651
|| ||||| || |||||||||||||| ||| || | ||||| || || || |||| |
Sbjct 19579561 ACCGAAACCTTCTCGATGGGCGTCAACATGCCCGCCCGCACCGTGGTTTTTGATTCGCAC 19579620
Query 196652 GAGAAGTTCGATGGACACGAGCGCCGCATGTTCCAGCCGCACGAGTTCATCCAAATGGCG 196711
|||| ||||| || | ||| |||| || ||||| ||||| ||| || |||||
Sbjct 19579621 AAGAAATTCGACGGCCTGGAGGTGCGCAATCTCAAGCCGGGCGAGTACATACAGATGGCT 19579680
Query 196712 GGCCGGGCCGGGCGCCGAGGG 196732
|| || ||||| ||||| |||
Sbjct 19579681 GGTCGAGCCGGTCGCCGTGGG 19579701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921622330878320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |