Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4 295 1e-74 >seq4 Length=20862834 Score = 295 bits (326), Expect = 1e-74 Identities = 575/838 (69%), Gaps = 25/838 (3%) Strand=Plus/Minus Query 42319 AGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCT 42378 ||||| || |||| |||||||| || ||| | || || | |||||| || | | || Sbjct 15863273 AGGCGGAGGCCTCCTTCTGGACCGTGGAAGAGGTGGATCTATCGAAGGACGCGACGGACT 15863214 Query 42379 GGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCG 42438 ||| || |||| ||||| | || || | | || ||||||||||| | Sbjct 15863213 GGGCCCGTCTCACTGACAACGAGCGCTACTTTATCTCCCATGTGCTAGCCTTCTTCGCTG 15863154 Query 42439 CCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACT 42498 |||| |||||||| || || ||||| |||| | | || | | ||||||||| | Sbjct 15863153 CCTCGGACGGCATTGTTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGATCA 15863094 Query 42499 TTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGT 42558 ||||| || |||||||||||||||||||||||||| ||||| |||||||| ||| ||| Sbjct 15863093 CGGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGATGT 15863034 Query 42559 ACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCA 42615 || | |||||| |||| ||||| | ||| || ||||| || |||||| Sbjct 15863033 ACAGCG---TGCTCATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTCA 15862977 Query 42616 AGGCCATGGAGACGATGCC--CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGA- 42672 | || || ||||| ||||| ||| | ||| |||||||||||||| | ||||| Sbjct 15862976 ATGCTATTGAGACCATGCCGGCTGTA--AAGCGCAAGGCGGACTGGGCCATGTCCTGGAT 15862919 Query 42673 ----TCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 |||| | || | |||| || | |||| | | | |||||| | ||||| || Sbjct 15862918 ATCCTCGAAA---TCGGC-CAAC-TTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAA 15862864 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGAT 42787 || |||||||| ||| ||| ||||| ||||| ||||| ||| || ||| || || Sbjct 15862863 GGAATCTTCTTTAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTC-AT 15862805 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTT 42847 |||||| || |||||||| ||||| || ||| | | ||||| || || || | ||||| Sbjct 15862804 GCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTT 15862745 Query 42848 TGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGC 42907 ||| ||| || | || ||| || ||| |||| | |||||| || | Sbjct 15862744 TGCGGTGCTCATG-TATC--ACCATCTAGTGCAGCGGCCCAAGCGGGAGCGCATCATCGA 15862688 Query 42908 CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTC 42967 ||||||| ||| || ||||| |||||| ||||||||||||| | | |||||||| Sbjct 15862687 GATCATCAGGGATGCTGTGGAAATCGAGCAGGAGTTCCTCACTGAAGCCCTGCCCGTCAA 15862628 Query 42968 CCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT 43027 || | ||||||||| | ||||||| | |||||||| ||| ||| ||||| | || Sbjct 15862627 TTTGATTGGCATGAACTGTGTTCTCATGTCCCAGTACATCGAGTTCGTGGCCGATCGGCT 15862568 Query 43028 CCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGA 43087 || | || | ||| | | |||||||||| | || ||| | || ||||| Sbjct 15862567 GCTAGGGGAGCTCGGTGTGGGTAAGATCTACAACACTAAGAATCCTTTCAATTTCATGGA 15862508 Query 43088 GAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 || |||||| |||| || ||||| ||||| || |||||| || ||||| |||||| Sbjct 15862507 GATGATCTCGCTGGACGGAAAGACAAACTTCTTTGAGAAGAAGGTGGCCGAGTACCAG 15862450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339129174560