Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq5 111 1e-19
>seq5
Length=28826359
Score = 111 bits (122), Expect = 1e-19
Identities = 458/705 (65%), Gaps = 18/705 (3%)
Strand=Plus/Plus
Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTG-TA 20193
||||| || || || |||| |||||||| | ||||| || | ||| ||| | ||
Sbjct 2480154 GGAAACGGCCGCGGCTTGCGTTTCAGCTGCTCCTTCAGTGGATCAACATG-GTTAAGATA 2480212
Query 20194 GATGTGGGCATCTCCCAACGTGTGAATAAACTC-CCCGGGTCTAAGACCAGTAACATGAG 20252
| || || || |||| ||||| ||||| || |||| | ||| ||||| ||||| |
Sbjct 2480213 CACATGAGCGTCGCCCATGGTGTGGATAAAGTCGCCCGTCTTCAAG-CCAGTTACATGGG 2480271
Query 20253 CAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGT 20312
| | ||| || || | |||| ||| || ||||| || || || || | |||||||
Sbjct 2480272 CTATCATGTAGGTCAGCAGGGCGTAGGATGCGATGTTGAATGGCACGCCAAGGCCCATGT 2480331
Query 20313 CTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC----GTCAGC--TACATAAAATT 20366
| | | |||||||||||| ||||| ||||| || ||| || || || || |
Sbjct 2480332 CGGCGCTGCGCTGATACAGCTGGCAGGACAGCTCTCCGCGGGTCTGCGAGACGTAGAACT 2480391
Query 20367 G-ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425
| | |||| || |||||||| || ||||| | | |||| || ||||| |||
Sbjct 2480392 GTGCCAGACAA-TGGCAGGGCGGGAGTGCCATTTTGGGTATGTCCAGGGGATTCCATGCA 2480450
Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAAT 20485
|||| ||||| | | |||| |||||||| | || || | | | ||||
Sbjct 2480451 GACATGATGATGCGACGATCGGACGGATTATGCCTGATGGTGTCAATTACTTGGCGCAAT 2480510
Query 20486 TGGTCAAACCCCTGGCCTGTATAGTCAGCATC-CGCGTCCACGTACGCCGCCCCAAAGTG 20544
||||| | |||| ||| | |||||| | || | || | | || | || ||||||||
Sbjct 2480511 TGGTCGATGCCCTTGCCGCTGTAGTCATCGTCGCAAGTGC-CATATTCGGCACCAAAGTG 2480569
Query 20545 CCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCG 20604
| |||||| || || || || || |||| ||| ||| | | | | |||| |
Sbjct 2480570 ACGCCACTGAAAGCCATAGACTGGACCCAGATCTCCCACGGCGCGATCGGTATGGCCCAG 2480629
Query 20605 CCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGAC-TCCTGTTCTTGAAA 20663
| |||| |||| |||| || ||| ||||| || | || | || | || ||
Sbjct 2480630 TTTGTCCAGATACTCTCTGGTGCTGTTTCCATCCCAAATGTGCACGTTCTTCGCCTGCAA 2480689
Query 20664 GCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCC 20723
| | | | || || | || || |||||||| |||||| | ||| || | ||
Sbjct 2480690 G-AGCTTCGCATCTGTCTTTCCGCCCACAAACCAAATCAGCTCCTCCACGACCGCGCGAA 2480748
Query 20724 AAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGA-CTATACCTGGCCTGC 20782
| ||||||| ||| ||||| || |||||||| ||||| | | | || | | |||
Sbjct 2480749 AGAACACCCTCTTGGTGGTCAGCAAGGGAAACGAAAGCCGCATATCGAAACGTAG-CTGA 2480807
Query 20783 ATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTCGAGTCGA 20827
|||| |||| || |||||||| | ||||| |||| ||||
Sbjct 2480808 CTGCCGAATACCGACAGGGTGCCGACATTTGTGCGATCGATTCGA 2480852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441372766897040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |