Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq5 111 1e-19 >seq5 Length=28826359 Score = 111 bits (122), Expect = 1e-19 Identities = 458/705 (65%), Gaps = 18/705 (3%) Strand=Plus/Plus Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTG-TA 20193 ||||| || || || |||| |||||||| | ||||| || | ||| ||| | || Sbjct 2480154 GGAAACGGCCGCGGCTTGCGTTTCAGCTGCTCCTTCAGTGGATCAACATG-GTTAAGATA 2480212 Query 20194 GATGTGGGCATCTCCCAACGTGTGAATAAACTC-CCCGGGTCTAAGACCAGTAACATGAG 20252 | || || || |||| ||||| ||||| || |||| | ||| ||||| ||||| | Sbjct 2480213 CACATGAGCGTCGCCCATGGTGTGGATAAAGTCGCCCGTCTTCAAG-CCAGTTACATGGG 2480271 Query 20253 CAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGT 20312 | | ||| || || | |||| ||| || ||||| || || || || | ||||||| Sbjct 2480272 CTATCATGTAGGTCAGCAGGGCGTAGGATGCGATGTTGAATGGCACGCCAAGGCCCATGT 2480331 Query 20313 CTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC----GTCAGC--TACATAAAATT 20366 | | | |||||||||||| ||||| ||||| || ||| || || || || | Sbjct 2480332 CGGCGCTGCGCTGATACAGCTGGCAGGACAGCTCTCCGCGGGTCTGCGAGACGTAGAACT 2480391 Query 20367 G-ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 | | |||| || |||||||| || ||||| | | |||| || ||||| ||| Sbjct 2480392 GTGCCAGACAA-TGGCAGGGCGGGAGTGCCATTTTGGGTATGTCCAGGGGATTCCATGCA 2480450 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAAT 20485 |||| ||||| | | |||| |||||||| | || || | | | |||| Sbjct 2480451 GACATGATGATGCGACGATCGGACGGATTATGCCTGATGGTGTCAATTACTTGGCGCAAT 2480510 Query 20486 TGGTCAAACCCCTGGCCTGTATAGTCAGCATC-CGCGTCCACGTACGCCGCCCCAAAGTG 20544 ||||| | |||| ||| | |||||| | || | || | | || | || |||||||| Sbjct 2480511 TGGTCGATGCCCTTGCCGCTGTAGTCATCGTCGCAAGTGC-CATATTCGGCACCAAAGTG 2480569 Query 20545 CCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCG 20604 | |||||| || || || || || |||| ||| ||| | | | | |||| | Sbjct 2480570 ACGCCACTGAAAGCCATAGACTGGACCCAGATCTCCCACGGCGCGATCGGTATGGCCCAG 2480629 Query 20605 CCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGAC-TCCTGTTCTTGAAA 20663 | |||| |||| |||| || ||| ||||| || | || | || | || || Sbjct 2480630 TTTGTCCAGATACTCTCTGGTGCTGTTTCCATCCCAAATGTGCACGTTCTTCGCCTGCAA 2480689 Query 20664 GCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCC 20723 | | | | || || | || || |||||||| |||||| | ||| || | || Sbjct 2480690 G-AGCTTCGCATCTGTCTTTCCGCCCACAAACCAAATCAGCTCCTCCACGACCGCGCGAA 2480748 Query 20724 AAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGA-CTATACCTGGCCTGC 20782 | ||||||| ||| ||||| || |||||||| ||||| | | | || | | ||| Sbjct 2480749 AGAACACCCTCTTGGTGGTCAGCAAGGGAAACGAAAGCCGCATATCGAAACGTAG-CTGA 2480807 Query 20783 ATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTCGAGTCGA 20827 |||| |||| || |||||||| | ||||| |||| |||| Sbjct 2480808 CTGCCGAATACCGACAGGGTGCCGACATTTGTGCGATCGATTCGA 2480852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441372766897040