Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5 134 3e-26 seq2 122 2e-22 >seq5 Length=28826359 Score = 134 bits (148), Expect = 3e-26 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | |||||| | ||| | ||| || || || || ||||| || | Sbjct 15755890 TCCACCACGAAGCCGAAGTACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGA 15755949 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || || ||||| ||||| || || |||||||||| |||||||||| ||||| Sbjct 15755950 CAGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGA---TCTGG 15756006 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||||||||| |||||||| || ||||| || ||||| || | ||| | ||| Sbjct 15756007 AGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTC 15756066 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || || || ||||| || || |||||||| Sbjct 15756067 GACCTCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCAT 15756117 Score = 96.9 bits (106), Expect = 8e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||| || || || | || || || |||||| Sbjct 28457489 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAG 28457548 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||||||| || || || || |||||||| || || || || Sbjct 28457549 ATCAGACGCTGCTG---ATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACA 28457605 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | || || || | ||||| ||||| || || ||||| || Sbjct 28457606 TTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTC 28457665 Query 288460 ACGAATATCTGCATT 288474 ||||| || |||||| Sbjct 28457666 ACGAAGATTTGCATT 28457680 >seq2 Length=30136903 Score = 122 bits (134), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| || || || | || || || |||||| Sbjct 19092360 TCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAG 19092419 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || |||||| ||||| || || |||||||| || || |||||| Sbjct 19092420 ATGAGACGCTGCTGG---TCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACG 19092476 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | || || || || ||||| || || |||||||||||||| Sbjct 19092477 TTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCGGTCAGAGTCTTC 19092536 Query 288460 ACGAATATCTGCAT 288473 |||||||||||||| Sbjct 19092537 ACGAATATCTGCAT 19092550 Score = 111 bits (122), Expect = 4e-19 Identities = 169/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || | ||| | || || || ||||| || ||||| | Sbjct 19092552 CCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 19092611 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || |||||||| |||||||| || | ||| Sbjct 19092612 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGG 19092671 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || |||||||| || || |||||||| || || | ||| | || || Sbjct 19092672 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACC 19092731 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG--TTATTCT 288484 || || ||||| || || || |||| || || || || ||||||||| || ||||||| Sbjct 19092732 TCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTGTATTATTCT 19092791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654309314068