Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4 152 6e-32 seq5 129 7e-25 >seq4 Length=20862834 Score = 152 bits (168), Expect = 6e-32 Identities = 322/478 (67%), Gaps = 2/478 (0%) Strand=Plus/Plus Query 125773 CTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTT 125832 |||||| |||||||||||||| ||||||| ||| ||||||| |||| || || || Sbjct 15862468 CTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCATGAAATTGAAAGGATT 15862527 Query 125833 CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCGAGACGTACTC 125892 ||| | ||| | || | ||| || | || || || ||||| | ||| |||| Sbjct 15862528 CTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAGCCGATCGGCCACGAACTC 15862587 Query 125893 AATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAA 125952 ||||||| ||||| || ||||||| || || | || || || || || Sbjct 15862588 GATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATTGACGGGCAGGGCTTCAGT 15862647 Query 125953 GATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTGAATGGTGTCCACCCC 126012 || |||| ||| ||| |||||||| || |||| | ||| || ||| ||| | | Sbjct 15862648 GAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCTCGATGATGCGCTCC-CGCT 15862706 Query 126013 AGGTCTATTGCGCAAAGTCTTGA-AGAGTTCCACGGCAAACTCTTGGTGGAGACCCTCGT 126071 || | ||| | | | ||| | | ||| ||||| || ||| ||||| |||| Sbjct 15862707 TGGGCCGCTGCACTAGATGGTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGT 15862766 Query 126072 CACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACC 126131 |||||||||| || || || |||||| ||| || ||||||||||| |||||||||| || Sbjct 15862767 CACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCC 15862826 Query 126132 AGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGA 126191 | || |||| ||| || ||||||||||| ||||| ||| || |||| | Sbjct 15862827 AAAAGATCGAGGCAAAGCTGCCGCTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAA 15862886 Query 126192 GACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGCGCCTT 126249 |||||| |||||| | ||| || | | | ||| ||| ||||| | |||||| Sbjct 15862887 TACGCTCGGCAAAGTTGGCCGATTTCGAGGATATCCAGGACATGGCCCAGTCCGCCTT 15862944 >seq5 Length=28826359 Score = 129 bits (142), Expect = 7e-25 Identities = 188/263 (71%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 171908 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATTG 171967 || ||||| ||| | || || || ||||| ||||| | ||| || || | ||||| ||| Sbjct 597189 TCCTTGCCGCCCGTCAGCCGAGTACCAAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 597248 Query 171968 TTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCACC 172026 || ||||| | ||||| | ||||| || || || || ||| | ||||||||| || || Sbjct 597249 TTCGAACCAACGTAGTTCTGGGCCAGATTCACGATGGTCATCTG-GAGGGAGACCTCGCC 597307 Query 172027 GTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCATC 172086 ||| |||||||||||| | ||||| || | | | || ||| |||||||||| ||| Sbjct 597308 GTGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTCACCTCGCG 597367 Query 172087 CTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 172146 |||| ||| | |||||| | |||||||||| | ||| ||||| ||||| || Sbjct 597368 CTTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCGGGCTTCAGGCCATC 597427 Query 172147 GGCCATGTGCGCGATGGAACGCT 172169 ||| | | |||||| |||| Sbjct 597428 CACCAGGCTGGGGATGGAGCGCT 597450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353555198480