Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5 150 2e-31 seq2 102 8e-17 seq1 95.1 1e-14 >seq5 Length=28826359 Score = 150 bits (166), Expect = 2e-31 Identities = 1105/1774 (62%), Gaps = 35/1774 (2%) Strand=Plus/Minus Query 153672 TTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCG 153731 ||||| || |||||| ||||| | ||||| ||||| || || ||||| ||||| ||| Sbjct 15308261 TTGTCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCCG 15308202 Query 153732 GTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGC 153791 ||||| | ||| |||||| | | | || | | || ||| || | ||||| Sbjct 15308201 GTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGGC 15308142 Query 153792 TGCGCTA--TAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCG 153849 | |||| | |||| ||||||||||| || ||||| || || || || | ||| || | Sbjct 15308141 TCTGCTACGTGAACA--TTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAG 15308084 Query 153850 CCATGTCAA-TCAAGTTTTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATG 153908 |||| | || | | |||||||| |||||||| |||||||| || | | || Sbjct 15308083 CCATTTTAATTGTGGATTTTACTG-AAATTTCCCATACAGTTTTATAAAGATCGCGAACC 15308025 Query 153909 TCGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGC 153968 | | ||| || ||||| | || | ||| | | | || || ||| | Sbjct 15308024 TTTTGGGGAATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAAATTATTTTATTTTTC 15307965 Query 153969 ATGTGGTCGTCGTACAAATTTAGTCGACATAAAT-CTTCAACCAAGTGCTGGTTAATTAC 154027 || | || || | || | | ||||| | |||| || || || || | || Sbjct 15307964 ATCTCATCATCCCATAAGTCCAACTCTGTTAAATCCCTCAA-TAAATGATGATTGACCAC 15307906 Query 154028 TTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGA 154087 |||||| || || | ||||| || | | ||| | ||| |||| | || ||||| || Sbjct 15307905 TTGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGA 15307846 Query 154088 TTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGA 154147 |||||| || || | ||||| || |||| |||||| ||||| ||| || ||||| || Sbjct 15307845 TTCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGA 15307786 Query 154148 GTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGT 154207 || | | ||||| ||| |||| ||| | | ||||| ||| | ||| || Sbjct 15307785 ATTCCTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGCCAATCCCATAGGTTCGT 15307726 Query 154208 AG--GTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTA 154265 | ||| | | |||||| || ||||| | || || || | ||||| | | Sbjct 15307725 TGGAGTTTTA--TCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGACTTCCTTCA 15307668 Query 154266 TAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAG 154325 || | || || || || || | || ||||| ||||||| || || | Sbjct 15307667 TAGGTTTCATATGGACCAAATGCTTGAGCAAGTTCACAACTAGCTTCTAGAGCTCCAAAA 15307608 Query 154326 TATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAAT 154385 || | ||||| ||||||| |||||| | ||||| || ||||| || || || Sbjct 15307607 TAAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAA 15307548 Query 154386 CCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTT 154445 | || || | ||||| || || || |||||||| || | || | || | || || Sbjct 15307547 CGCATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCCTT 15307488 Query 154446 AAATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATTTANN 154505 ||||| || | ||||| | || ||| ||||| ||||| || |||||||| || | Sbjct 15307487 AAATTGGACTTCTTGGCTTCTGGCAAAGGGTAATAGTTGATGTCTATAATTTTGTTAAGA 15307428 Query 154506 NNNNNNNNNNNNNNnnnnnnnnNNNNNNNNNATGCGACAAAATCAAAC----ACTCCGCT 154561 || |||||| || || ||| Sbjct 15307427 TTTTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTTCTGCT 15307368 Query 154562 TTTAATAAAACGATTTACACACACAGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACT 154621 ||| || | | || | | || || || ||||| || || || || |||| | Sbjct 15307367 GTTACGAACATG-TTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATCAG--GT 15307311 Query 154622 ACT--GTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTC 154679 || ||| | |||||||||| || |||||||||||| ||| ||||| | |||| Sbjct 15307310 GCTGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGT 15307251 Query 154680 TGATTCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACT 154739 ||||| || | ||||| | || || | | ||||| ||| | || ||||||||| Sbjct 15307250 TGATTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCACT 15307191 Query 154740 TGGGTTTCAATAATTG--TGCGAAACAGACTTCGCGCCTCAACTTGACAAGTAAATCGAT 154797 || | ||| ||||| | | | | || || | || || ||| | | | || Sbjct 15307190 TGCGATTCTATAATGGCAAACCATAAAGCCT--GGGCTTCCACTGTTCGATTCGCACGTC 15307133 Query 154798 TTTCGCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAAC 154857 ||| |||||||| | || |||| |||||| | | | | || || | | Sbjct 15307132 CTTCTTGCTCATATTTGACATAGAGTTCTTCAAATTTTTCGCCCCAAACATCTTGAAGGC 15307073 Query 154858 CGGGACAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAA 154917 | ||||| | ||||||||||||||||| |||| ||| | || |||||||| | Sbjct 15307072 CAGGACATTTATGTGGACACATCAATGACCAGCTTTCATTTGCCTCAACACGTTTCATGA 15307013 Query 154918 ACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCA 154977 | | ||| || | ||| |||||||| || | |||||| || || ||||| || Sbjct 15307012 AAAGATCAGGAATCCATAAAGCGTAAAAAAGATCACGTGCTCGGTTTTCTTCTTTTCCAG 15306953 Query 154978 TGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGG 155037 |||||| || | | ||||| ||| | | || | ||||| ||||||||||| | | Sbjct 15306952 TGTTTCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAG 15306893 Query 155038 CCATCGCGCCTTTGCGTTTT---CCTCCTTGATCCACGTGACGCACACAATTATTGTACA 155094 | | || || | |||| ||||| ||||| || | || | |||||| | | Sbjct 15306892 CAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGAGCCACATTATTAAAAA 15306833 Query 155095 CGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGC 155154 | | |||| ||| | | || | | ||| ||||| || |||| ||| | |||| Sbjct 15306832 CTCTTAACATTGGAACTAATCCATTCGACGTACCGTTCGTTCCACATATTGAAGTGCCTT 15306773 Query 155155 GAGCACGCGCTTTATGAACATTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCAC 155214 |||||| ||||||||| | || | || || | |||| || || | |||| Sbjct 15306772 TAGCACGAATGCAATGAACATT-AGTCCGATTCCACCTGCTGATTTGGAAATCAGTGCAC 15306714 Query 155215 AGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAAC 155274 | | | | | || | || |||| || || |||| ||||| | |||| Sbjct 15306713 ATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCATTGTCAAAAGAAAAC 15306654 Query 155275 ACGAAGATAATTGAGGTTGA-GGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTA 155333 |||| || ||||||||| || | || | || ||||| | || || || || ||| Sbjct 15306653 ACGAGGACAATTGAGGTCGATTTGTAG-CAGCAGCAAAAAGCGTTGGCGAGGCATGCGTA 15306595 Query 155334 AACATTTTGTT--GGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGT 155391 || | | ||| | | | || |||||||||||| | || || ||||| || || | Sbjct 15306594 AA-GTATCGTTCAGACAG-TAGGTTGTAAGTTTCCACTGCCGCATCAATATCGTCTCCAT 15306537 Query 155392 GTATACCGATCGCCACGCGCATCAGCATGTGTTG 155425 | ||||| | || |||||||||||||||||||| Sbjct 15306536 GAATACCAAGAGCGACGCGCATCAGCATGTGTTG 15306503 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||||| | || | ||||| || || || |||||||| || | Sbjct 28457452 ACCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 28457511 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||| ||||| | || || |||||||| || || || Sbjct 28457512 CAGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGG 28457571 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| ||| ||| | || ||| || || || Sbjct 28457572 AATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGAC 28457631 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||||||| || | |||||| ||||| ||||||||||| Sbjct 28457632 CTCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCATTTT 28457682 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| |||| ||| | || || || || |||||||| ||||| | | || || | || Sbjct 15755905 AAGTACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATC 15755964 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | |||||||| || | || | ||||| || || ||||||||||||||||| || Sbjct 15755965 TTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTC 15756024 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 || | | || ||||| ||| || | ||||| | || || || | ||||| || Sbjct 15756025 CTGGA-TCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTTATGG 15756083 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||| || | || ||||| || || ||||| Sbjct 15756084 TCTTGCCCGTTAGGGTCTTTACAAAGATCTGCAT 15756117 >seq2 Length=30136903 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||||| | ||| | ||||| || || || |||||||| || | Sbjct 19092551 ACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 19092610 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||||||||| | ||||| ||||||||||| || || Sbjct 19092611 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGG 19092670 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| || ||| | || || | ||||| Sbjct 19092671 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCAC 19092730 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||| || || ||||| ||||| || || || |||||||| Sbjct 19092731 CTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTT 19092781 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | ||||| || || || |||||||| || | | ||||| | || Sbjct 19092339 AGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCC 19092398 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | ||||| ||||||||||| || || ||||| || || || Sbjct 19092399 TCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 19092458 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || || | ||||| || | || | ||| Sbjct 19092459 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTT 19092518 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||||| ||| || ||||| || ||||| Sbjct 19092519 TTTCCGGTCAGAGTCTTCACGAATATCTGCAT 19092550 >seq1 Length=22123056 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | || || |||| || |||||||||||| Sbjct 6630551 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCG 6630492 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | |||||||| || || ||||| || || || || || || || ||| Sbjct 6630491 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 6630432 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || || || || || | || | ||||||||| |||| ||| Sbjct 6630431 ACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTT 6630372 Query 64427 TTTACGAAAATTTGCATTTT 64446 || |||||||| |||||||| Sbjct 6630371 TTCACGAAAATCTGCATTTT 6630352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644762526640