Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-20 >seq3 Length=33007066 Score = 114 bits (126), Expect = 1e-20 Identities = 162/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 |||||| || ||| | || |||||||| ||||| || ||| || || || |||||| Sbjct 31498530 TGGGTGAGGGACCACCGCGTGCACCACAAATACTCGGAGACGGACGCGGATCCGCACAAC 31498471 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 || ||| | || |||| |||||||||||||| ||||| |||||| ||| |||| ||| Sbjct 31498470 GCAAACCGCGGATTCTTCTTCTCGCACGTGGGCTGGCTGATGATGCTGAAGCACCCGGAC 31498411 Query 108586 GTGAT--CTCGGCCGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGGTGGTAG 108643 ||| | |||| || || | || ||||||| ||| | | ||||||| ||||| Sbjct 31498410 GTGCTGCGTCGG--GGCCGCCAGATCGACATGAGCGACGTGCTCGCCGATCCCGTGGTGC 31498353 Query 108644 TGTGGCACACCAAGTACTTTATTCCTCTTAAAATTTTGCTCTGTTT 108689 | ||| |||||||| || || ||||| || || ||||| || Sbjct 31498352 GCTTCCACCAGAAGTACTTCATCCCCCTTAAGATCTTTCTCTGCTT 31498307 Score = 98.7 bits (108), Expect = 8e-16 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 108862 AACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTC 108921 ||||| |||||| || | | | ||||||||||||||||||||||||||||||| ||| Sbjct 22546210 AACAAGTTGGTGTCGACCCTCACCATCGGCGAGGGATGGCACAACTACCACCACGTCTTC 22546269 Query 108922 CCCTACGACTACAAGGCCGCCGAGTTGGG 108950 |||| ||||||||||| |||||| |||| Sbjct 22546270 CCCTGGGACTACAAGGCAGCCGAGCTGGG 22546298 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414 |||||||||||||| || ||||| | ||||| ||||||||||||| ||| | | Sbjct 22545634 ACGGCCGGCGTCCACCGTCTGTGGTCGCACAAGGCCTACAAGGCCAAGCTGCCGCTGCGC 22545693 Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474 | ||||| ||| ||| || |||| ||||||| |||| | ||||| | Sbjct 22545694 ATCTTCCTTATGCTGTGCCAGTCCCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCCGT 22545753 Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || ||| | || ||||| |||| | ||||||| ||||| || |||||| || | Sbjct 22545754 GACCACCGTGTGCACCATAAGTTCACTGACACACACGCCGATCCCCACAACTCCCGACGC 22545813 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589 || |||| ||| | ||| |||| ||||| ||| | ||| |||| ||||||| Sbjct 22545814 GGCTTCTTCTTCGCCCACATGGGCTGGCTGATGTGCAAGAAGCACCCGGACGTGA 22545868 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 118178 TCCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACT 118237 |||||| || || |||| ||| ||||||||| || || || | ||||| |||| Sbjct 5096527 TCCGTCTCGCCCCGCCCGTCCGGCCTCTTGATAGTAGCCTTCAATGGATTTTGGCAGCGA 5096586 Query 118238 GTGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGTCGA 118297 || ||| | || || || || ||||| || ||||||||||| || || || || || | Sbjct 5096587 GTAATGCAGGACAAATCGAACATCGGGCTTGTCGATGCCCATGCCAAATGCAATAGTGGC 5096646 Query 118298 ACATATCACTCGGGTCTCGTTCGCCATCCA 118327 ||| ||||||||| ||| ||| | || ||| Sbjct 5096647 ACAAATCACTCGGATCTTGTTGGTCAACCA 5096676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381772772082864