Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_011335.1
Length=119343
Score E
Sequences producing significant alignments: (Bits) Value
seq3 114 1e-20
>seq3
Length=33007066
Score = 114 bits (126), Expect = 1e-20
Identities = 162/226 (72%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525
|||||| || ||| | || |||||||| ||||| || ||| || || || ||||||
Sbjct 31498530 TGGGTGAGGGACCACCGCGTGCACCACAAATACTCGGAGACGGACGCGGATCCGCACAAC 31498471
Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585
|| ||| | || |||| |||||||||||||| ||||| |||||| ||| |||| |||
Sbjct 31498470 GCAAACCGCGGATTCTTCTTCTCGCACGTGGGCTGGCTGATGATGCTGAAGCACCCGGAC 31498411
Query 108586 GTGAT--CTCGGCCGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGGTGGTAG 108643
||| | |||| || || | || ||||||| ||| | | ||||||| |||||
Sbjct 31498410 GTGCTGCGTCGG--GGCCGCCAGATCGACATGAGCGACGTGCTCGCCGATCCCGTGGTGC 31498353
Query 108644 TGTGGCACACCAAGTACTTTATTCCTCTTAAAATTTTGCTCTGTTT 108689
| ||| |||||||| || || ||||| || || ||||| ||
Sbjct 31498352 GCTTCCACCAGAAGTACTTCATCCCCCTTAAGATCTTTCTCTGCTT 31498307
Score = 98.7 bits (108), Expect = 8e-16
Identities = 75/89 (84%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 108862 AACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTC 108921
||||| |||||| || | | | ||||||||||||||||||||||||||||||| |||
Sbjct 22546210 AACAAGTTGGTGTCGACCCTCACCATCGGCGAGGGATGGCACAACTACCACCACGTCTTC 22546269
Query 108922 CCCTACGACTACAAGGCCGCCGAGTTGGG 108950
|||| ||||||||||| |||||| ||||
Sbjct 22546270 CCCTGGGACTACAAGGCAGCCGAGCTGGG 22546298
Score = 95.1 bits (104), Expect = 9e-15
Identities = 162/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414
|||||||||||||| || ||||| | ||||| ||||||||||||| ||| | |
Sbjct 22545634 ACGGCCGGCGTCCACCGTCTGTGGTCGCACAAGGCCTACAAGGCCAAGCTGCCGCTGCGC 22545693
Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474
| ||||| ||| ||| || |||| ||||||| |||| | ||||| |
Sbjct 22545694 ATCTTCCTTATGCTGTGCCAGTCCCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCCGT 22545753
Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534
|| ||| | || ||||| |||| | ||||||| ||||| || |||||| || |
Sbjct 22545754 GACCACCGTGTGCACCATAAGTTCACTGACACACACGCCGATCCCCACAACTCCCGACGC 22545813
Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589
|| |||| ||| | ||| |||| ||||| ||| | ||| |||| |||||||
Sbjct 22545814 GGCTTCTTCTTCGCCCACATGGGCTGGCTGATGTGCAAGAAGCACCCGGACGTGA 22545868
Score = 86.0 bits (94), Expect = 5e-12
Identities = 109/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 118178 TCCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACT 118237
|||||| || || |||| ||| ||||||||| || || || | ||||| ||||
Sbjct 5096527 TCCGTCTCGCCCCGCCCGTCCGGCCTCTTGATAGTAGCCTTCAATGGATTTTGGCAGCGA 5096586
Query 118238 GTGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGTCGA 118297
|| ||| | || || || || ||||| || ||||||||||| || || || || || |
Sbjct 5096587 GTAATGCAGGACAAATCGAACATCGGGCTTGTCGATGCCCATGCCAAATGCAATAGTGGC 5096646
Query 118298 ACATATCACTCGGGTCTCGTTCGCCATCCA 118327
||| ||||||||| ||| ||| | || |||
Sbjct 5096647 ACAAATCACTCGGATCTTGTTGGTCAACCA 5096676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381772772082864
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |