Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5 178 1e-39 seq4 138 1e-27 seq2 123 2e-23 seq1 114 1e-20 >seq5 Length=28826359 Score = 178 bits (196), Expect = 1e-39 Identities = 699/1089 (64%), Gaps = 23/1089 (2%) Strand=Plus/Minus Query 152685 TCAACGGTAAACTGTTGTGTGTGCGCCGCAGGCTTTGTGCGCAAATAATACATGCCCGTT 152744 || || ||||| ||| || || || ||||| |||||||| ||||| ||||| || ||| Sbjct 15308258 TCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCCGGTT 15308199 Query 152745 TTGAGGCCGCAGCG--CCACGAGTAATTGTGAATCGAAGTCATCACAGCGTACGTCGGTT 152802 || || || ||| ||| ||| || || || || |||| |||| | || | Sbjct 15308198 TTTAGTCC--AGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGGCT 15308141 Query 152803 GCGCCACGAACAGATTAAACGATTGGCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCA 152862 || ||| | ||||||||| || || ||||| || || || | || || |||| Sbjct 15308140 CTGCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCA 15308081 Query 152863 TCTCAATCATGCGTTTTGCCTTCATCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTAT 152922 | | ||| || |||| | || ||||| | ||||| || | || ||| | | Sbjct 15308080 TTTTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCGAACCTTTT 15308021 Query 152923 CCGGTATACCTTCAATGTTCTGAATAGAGCCCTTGTGTGCAAAAATAGCGTTTCGTATTT 152982 || ||| |||||| | ||||| |||||| || | || || ||| || | Sbjct 15308020 GGGGAATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAAATTATTTTATTTTTCATCT 15307961 Query 152983 CGGGCGTGTACACGTTCA-----GTTTAATGAGGTCATCGATCAAGTACTGGTTGACCAC 153037 | | | || || ||| ||| | || || || | || |||||||| Sbjct 15307960 CATCATCCCATAAGTCCAACTCTGTTAAATC----CCTCAATAAATGA-TGATTGACCAC 15307906 Query 153038 TTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGA 153097 |||||| || || | || ||||||||| ||| | ||| | || | ||||| || || Sbjct 15307905 TTGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGA 15307846 Query 153098 TTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGA 153157 ||||||||| || | ||||| || || | ||| || ||||| ||| || ||||| || Sbjct 15307845 TTCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGA 15307786 Query 153158 ATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGA 153217 ||||| | |||||| | |||||| || |||| ||||||||||| || || Sbjct 15307785 ATTCCTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGCCAATCCCATAGGTTCGT 15307726 Query 153218 CGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAA 153277 || || | |||||| || || |||| | |||| || | ||||| || || | Sbjct 15307725 TGGAGTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGACTTCCTTCATA 15307666 Query 153278 CGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTA 153337 || || || ||| || ||||| || ||||| || || || ||| | || Sbjct 15307665 GGTTTCATATGGACCAAATGCTTGAGCAAGTTCACAACTAGCTTCTAGAGCTCCAAAATA 15307606 Query 153338 TATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCG 153397 || ||||| ||||||| || | || | ||||||||||| || || || | || Sbjct 15307605 AATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAACG 15307546 Query 153398 CAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTC 153457 || | | || ||||| || ||||| || ||||| | ||||| || |||||| | Sbjct 15307545 CATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCCTTAA 15307486 Query 153458 GTTGCTGCGCCTCGC-GCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGT 153516 ||| | | || || || | ||| || | ||| || ||||||||||| || | Sbjct 15307485 ATTGGACTTCTTGGCTTCTGGCAAAGGG-TAATAGTTGATGTCTATAATTTTGTTAAGAT 15307427 Query 153517 TGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGA 153576 | | || ||| |||| | || | ||| | ||||||||| | ||| || Sbjct 15307426 TTTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATA---CGTTTTTTCTG 15307370 Query 153577 CGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGT 153636 | |||| | |||| || || || || | ||| ||||| || |||| || | || Sbjct 15307369 CTGTTACGAACATGTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATCAG-GT 15307311 Query 153637 CGCT--GTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTG 153694 ||| ||||| || || || | || | || |||||||| || ||| | |||||| Sbjct 15307310 -GCTGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTG 15307252 Query 153695 CTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGAC 153754 |||||||| || | |||||| | || || || |||||||| || || || || || Sbjct 15307251 TTGATTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCAC 15307192 Query 153755 TTGCGTTTC 153763 ||||| ||| Sbjct 15307191 TTGCGATTC 15307183 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 |||||||| | | | |||||||| |||||||| || || || || || || || Sbjct 15755909 ACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCC 15755968 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 | ||| || || | |||| | ||||||||| || ||||| || ||||||||||| | Sbjct 15755969 AATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGG 15756028 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 || || ||| | | ||| | ||| || | | || ||||| | || | || || Sbjct 15756029 ATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTTATGGTCTTG 15756088 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTA 138620 || || || || |||||||| |||||||||| ||| Sbjct 15756089 CCCGTTAGGGTCTTTACAAAGATCTGCATGGTTTA 15756123 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | || || || | | | |||||||| || |||||||||||| | Sbjct 28457453 CCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 28457512 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| || || ||||||| |||| |||||||| || || || || Sbjct 28457513 AGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 28457572 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | | ||| ||| Sbjct 28457573 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 28457632 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| |||||||| || || || ||||| Sbjct 28457633 TCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 28457679 >seq4 Length=20862834 Score = 138 bits (152), Expect = 1e-27 Identities = 501/772 (65%), Gaps = 29/772 (4%) Strand=Plus/Minus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 |||||||||| |||||| || ||| | || |||||||| ||| | || |||| || | Sbjct 15863195 ACGAGCGCTACTTTATCTCCCATGTGCTAGCCTTCTTCGCTGCCTCGGACGGCATTGTTA 15863136 Query 52153 ACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGAACTCG-AGGCGCAATACTTT 52211 || || || ||||| | | | | | || | | | | || |||| | | ||| Sbjct 15863135 ACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAG-ATCACGGAGGCACGTTGCTTC 15863077 Query 52212 TATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGAG 52271 || || || | ||| ||| |||||| | |||||||||| |||||||||| Sbjct 15863076 TACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGATGTACAGCGTGCTCATTGA- 15863018 Query 52272 CAGCTG-ATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACGTGCC 52330 || || ||| || ||| ||||||||| || | ||||| | ||| | |||| Sbjct 15863017 CACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTCAATGCTATTGAGACCATGCC 15862958 Query 52331 GTGCGTT---CGCAAAAAGGCTCAGTGGGCAATGAAGTGGAT-----CGAGAGCGACACC 52382 | || ||||| ||| | ||||| ||| ||||| ||| | || Sbjct 15862957 GGCTGTAAAGCGCAA---GGCGGACTGGGCCATGTCCTGGATATCCTCGAAATCG----- 15862906 Query 52383 GCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442 |||| | |||||||| || | ||||| || || || || | || ||| |||| Sbjct 15862905 GCCAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGCGGC 15862846 Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502 ||||||||| | ||||||| | || | | || | |||||||| ||||| ||| | Sbjct 15862845 AGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCC 15862786 Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562 |||||| |||| || || |||||||| || ||| ||||||||| ||| || | Sbjct 15862785 AACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGGTGCTCATGTATCAC 15862726 Query 52563 ACGCGCGTGA--CCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGG 52620 | ||| | | || || || || ||| || ||| || ||| || | Sbjct 15862725 CATCTAGTGCAGCGGCCCAAGCGGGAGCG--CATCATCGAGATCAT---CAGGGATGCTG 15862671 Query 52621 TGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACG 52680 ||| ||||| ||||||| | || | || ||||| ||| | || | ||||||||| Sbjct 15862670 TGGAAATCGAGCAGGAGTTCCTCACTGAAGCCCTGCCCGTCAATTTGATTGGCATGAACT 15862611 Query 52681 CGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGG 52739 | || ||||| | ||||||||||||| ||||| ||||| ||| | | | ||||||| Sbjct 15862610 -GTGTTCTCATGTCCCAGTACATCGAGTTCGTGGCCGATCGGCTGCTAGGGGAGCTCGGT 15862552 Query 52740 CAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAG 52799 | ||| || |||| || ||||| || | || ||| | | || ||||| || Sbjct 15862551 GTGGGTAAGATCTACAACACTAAGAATCCTTTCAATTTCATGGAGATGATCTCGCTGGAC 15862492 Query 52800 GGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAGCGTTTCGGTG 52851 || ||||| ||||| || |||||| || | |||||| |||| | |||| Sbjct 15862491 GGAAAGACAAACTTCTTTGAGAAGAAGGTGGCCGAGTACCAGCGCATGGGTG 15862440 >seq2 Length=30136903 Score = 123 bits (136), Expect = 2e-23 Identities = 236/341 (69%), Gaps = 9/341 (3%) Strand=Plus/Minus Query 57110 CAATGCCGATGATGCCGCAGCCGAGACGGCCGCCCGAGTTGCCGGTGGTCTTGCTCAGCG 57169 ||||||| |||| |||||||| | |||| |||| | ||||||||||||||||| ||| Sbjct 15750347 CAATGCCAATGACACCGCAGCCAATACGGGCGCCGGCATTGCCGGTGGTCTTGCTTAGCT 15750288 Query 57170 GATGTTCGGTGAGGCCGAGATCGTCGCGCTTCG-CGTGAACCACCAGACTGCGGCCGACG 57228 || | ||| | || || || ||| |||| || |||| |||| || | | Sbjct 15750287 CGTGACCACCCTTGCCCAAGTCATCA-GCGTCGGCGTGGACGACCACGGTGCGTCCTATG 15750229 Query 57229 ACGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCG 57288 | ||| | | ||||| ||||| ||| |||| | || || | ||| || | Sbjct 15750228 ATGCTGTCGGCACCGAACAGCGTGATCTTCGAGTCGGTGATGCTGACGGCCGTGGGGCTG 15750169 Query 57289 TTGGACACTTTGGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGA 57348 | || | |||| || ||||||||||||||| | ||| || | || |||| Sbjct 15750168 TC--AC-CGGCCGCCTGGATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCATCGGTGGGG 15750112 Query 57349 GCGCCGTGTTCGCTG--CCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGC 57406 || ||||| || || |||| ||||||||||| ||| | |||| ||||||||||| Sbjct 15750111 GCACCGTGCTCCTTGTTCCGG--GGGTTAAAGTGGGGGCCGGACGACATGCAGCCGTTGG 15750054 Query 57407 TGGTGTCGCCGAACTCGTGAACGTGAAATCCGTGCAGGCCC 57447 || |||| ||||||||||| || || ||||||||||| ||| Sbjct 15750053 TGTTGTCCCCGAACTCGTGCACATGGAATCCGTGCAGTCCC 15750013 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || ||||| | | |||||||| || ||||||||||| Sbjct 19092552 CCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 19092611 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| || || || |||| |||| |||||||| ||||| || || Sbjct 19092612 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGG 19092671 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||||| | ||||||| Sbjct 19092672 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACC 19092731 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| ||||| ||||| |||||||| Sbjct 19092732 TCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 19092778 Score = 100 bits (110), Expect = 3e-16 Identities = 166/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 138379 TAGCCGCAG---CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATG 138435 ||| ||||| ||||| || | ||||| || ||||| | | |||||||| || ||| Sbjct 19092312 TAGGCGCAGACTCCGCCACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATG 19092371 Query 138436 TTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGT 138495 |||||||| | ||| || ||||| || || || || | |||| |||||||| Sbjct 19092372 TTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGC 19092431 Query 138496 TGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCG 138555 ||||| || || || || || ||||| ||| || || | | || | ||||||| Sbjct 19092432 TGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCG 19092491 Query 138556 GTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | | ||||||||| | || | ||||| || |||||||| || || || |||||||| Sbjct 19092492 GATGGCTCCACCTCCAGGGTGATGGTTTTTCCGGTCAGAGTCTTCACGAATATCTGCAT 19092550 >seq1 Length=22123056 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | |||||| || || || | | |||||||| || |||||||||||| Sbjct 6630582 GCCGCCACGAAGACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGA 6630523 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| |||||| || || || |||| |||| | |||||| || || || || Sbjct 6630522 CAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 6630463 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| | | ||| || Sbjct 6630462 AATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAAC 6630403 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || |||||||| ||||| || ||||||||||| Sbjct 6630402 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 6630355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262362780320