Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq5 178 1e-39
seq4 138 1e-27
seq2 123 2e-23
seq1 114 1e-20
>seq5
Length=28826359
Score = 178 bits (196), Expect = 1e-39
Identities = 699/1089 (64%), Gaps = 23/1089 (2%)
Strand=Plus/Minus
Query 152685 TCAACGGTAAACTGTTGTGTGTGCGCCGCAGGCTTTGTGCGCAAATAATACATGCCCGTT 152744
|| || ||||| ||| || || || ||||| |||||||| ||||| ||||| || |||
Sbjct 15308258 TCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCCGGTT 15308199
Query 152745 TTGAGGCCGCAGCG--CCACGAGTAATTGTGAATCGAAGTCATCACAGCGTACGTCGGTT 152802
|| || || ||| ||| ||| || || || || |||| |||| | || |
Sbjct 15308198 TTTAGTCC--AGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGGCT 15308141
Query 152803 GCGCCACGAACAGATTAAACGATTGGCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCA 152862
|| ||| | ||||||||| || || ||||| || || || | || || ||||
Sbjct 15308140 CTGCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCA 15308081
Query 152863 TCTCAATCATGCGTTTTGCCTTCATCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTAT 152922
| | ||| || |||| | || ||||| | ||||| || | || ||| | |
Sbjct 15308080 TTTTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCGAACCTTTT 15308021
Query 152923 CCGGTATACCTTCAATGTTCTGAATAGAGCCCTTGTGTGCAAAAATAGCGTTTCGTATTT 152982
|| ||| |||||| | ||||| |||||| || | || || ||| || |
Sbjct 15308020 GGGGAATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAAATTATTTTATTTTTCATCT 15307961
Query 152983 CGGGCGTGTACACGTTCA-----GTTTAATGAGGTCATCGATCAAGTACTGGTTGACCAC 153037
| | | || || ||| ||| | || || || | || ||||||||
Sbjct 15307960 CATCATCCCATAAGTCCAACTCTGTTAAATC----CCTCAATAAATGA-TGATTGACCAC 15307906
Query 153038 TTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGA 153097
|||||| || || | || ||||||||| ||| | ||| | || | ||||| || ||
Sbjct 15307905 TTGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGA 15307846
Query 153098 TTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGA 153157
||||||||| || | ||||| || || | ||| || ||||| ||| || ||||| ||
Sbjct 15307845 TTCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGA 15307786
Query 153158 ATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGA 153217
||||| | |||||| | |||||| || |||| ||||||||||| || ||
Sbjct 15307785 ATTCCTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGCCAATCCCATAGGTTCGT 15307726
Query 153218 CGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAA 153277
|| || | |||||| || || |||| | |||| || | ||||| || || |
Sbjct 15307725 TGGAGTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGACTTCCTTCATA 15307666
Query 153278 CGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTA 153337
|| || || ||| || ||||| || ||||| || || || ||| | ||
Sbjct 15307665 GGTTTCATATGGACCAAATGCTTGAGCAAGTTCACAACTAGCTTCTAGAGCTCCAAAATA 15307606
Query 153338 TATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCG 153397
|| ||||| ||||||| || | || | ||||||||||| || || || | ||
Sbjct 15307605 AATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAACG 15307546
Query 153398 CAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTC 153457
|| | | || ||||| || ||||| || ||||| | ||||| || |||||| |
Sbjct 15307545 CATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCCTTAA 15307486
Query 153458 GTTGCTGCGCCTCGC-GCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGT 153516
||| | | || || || | ||| || | ||| || ||||||||||| || |
Sbjct 15307485 ATTGGACTTCTTGGCTTCTGGCAAAGGG-TAATAGTTGATGTCTATAATTTTGTTAAGAT 15307427
Query 153517 TGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGA 153576
| | || ||| |||| | || | ||| | ||||||||| | ||| ||
Sbjct 15307426 TTTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATA---CGTTTTTTCTG 15307370
Query 153577 CGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGT 153636
| |||| | |||| || || || || | ||| ||||| || |||| || | ||
Sbjct 15307369 CTGTTACGAACATGTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATCAG-GT 15307311
Query 153637 CGCT--GTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTG 153694
||| ||||| || || || | || | || |||||||| || ||| | ||||||
Sbjct 15307310 -GCTGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTG 15307252
Query 153695 CTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGAC 153754
|||||||| || | |||||| | || || || |||||||| || || || || ||
Sbjct 15307251 TTGATTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCAC 15307192
Query 153755 TTGCGTTTC 153763
||||| |||
Sbjct 15307191 TTGCGATTC 15307183
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465
|||||||| | | | |||||||| |||||||| || || || || || || ||
Sbjct 15755909 ACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCC 15755968
Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525
| ||| || || | |||| | ||||||||| || ||||| || ||||||||||| |
Sbjct 15755969 AATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGG 15756028
Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585
|| || ||| | | ||| | ||| || | | || ||||| | || | || ||
Sbjct 15756029 ATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTTATGGTCTTG 15756088
Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTA 138620
|| || || || |||||||| |||||||||| |||
Sbjct 15756089 CCCGTTAGGGTCTTTACAAAGATCTGCATGGTTTA 15756123
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| || | || || || | | | |||||||| || |||||||||||| |
Sbjct 28457453 CCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 28457512
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||| || || ||||||| |||| |||||||| || || || ||
Sbjct 28457513 AGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 28457572
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| || || ||||| ||| || || | | || | |||||| | | ||| |||
Sbjct 28457573 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 28457632
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || ||||| |||||||| || || || |||||
Sbjct 28457633 TCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 28457679
>seq4
Length=20862834
Score = 138 bits (152), Expect = 1e-27
Identities = 501/772 (65%), Gaps = 29/772 (4%)
Strand=Plus/Minus
Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152
|||||||||| |||||| || ||| | || |||||||| ||| | || |||| || |
Sbjct 15863195 ACGAGCGCTACTTTATCTCCCATGTGCTAGCCTTCTTCGCTGCCTCGGACGGCATTGTTA 15863136
Query 52153 ACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGAACTCG-AGGCGCAATACTTT 52211
|| || || ||||| | | | | | || | | | | || |||| | | |||
Sbjct 15863135 ACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAG-ATCACGGAGGCACGTTGCTTC 15863077
Query 52212 TATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGAG 52271
|| || || | ||| ||| |||||| | |||||||||| ||||||||||
Sbjct 15863076 TACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGATGTACAGCGTGCTCATTGA- 15863018
Query 52272 CAGCTG-ATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACGTGCC 52330
|| || ||| || ||| ||||||||| || | ||||| | ||| | ||||
Sbjct 15863017 CACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTCAATGCTATTGAGACCATGCC 15862958
Query 52331 GTGCGTT---CGCAAAAAGGCTCAGTGGGCAATGAAGTGGAT-----CGAGAGCGACACC 52382
| || ||||| ||| | ||||| ||| ||||| ||| | ||
Sbjct 15862957 GGCTGTAAAGCGCAA---GGCGGACTGGGCCATGTCCTGGATATCCTCGAAATCG----- 15862906
Query 52383 GCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442
|||| | |||||||| || | ||||| || || || || | || ||| ||||
Sbjct 15862905 GCCAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGCGGC 15862846
Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502
||||||||| | ||||||| | || | | || | |||||||| ||||| ||| |
Sbjct 15862845 AGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCC 15862786
Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562
|||||| |||| || || |||||||| || ||| ||||||||| ||| || |
Sbjct 15862785 AACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGGTGCTCATGTATCAC 15862726
Query 52563 ACGCGCGTGA--CCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGG 52620
| ||| | | || || || || ||| || ||| || ||| || |
Sbjct 15862725 CATCTAGTGCAGCGGCCCAAGCGGGAGCG--CATCATCGAGATCAT---CAGGGATGCTG 15862671
Query 52621 TGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACG 52680
||| ||||| ||||||| | || | || ||||| ||| | || | |||||||||
Sbjct 15862670 TGGAAATCGAGCAGGAGTTCCTCACTGAAGCCCTGCCCGTCAATTTGATTGGCATGAACT 15862611
Query 52681 CGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGG 52739
| || ||||| | ||||||||||||| ||||| ||||| ||| | | | |||||||
Sbjct 15862610 -GTGTTCTCATGTCCCAGTACATCGAGTTCGTGGCCGATCGGCTGCTAGGGGAGCTCGGT 15862552
Query 52740 CAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAG 52799
| ||| || |||| || ||||| || | || ||| | | || ||||| ||
Sbjct 15862551 GTGGGTAAGATCTACAACACTAAGAATCCTTTCAATTTCATGGAGATGATCTCGCTGGAC 15862492
Query 52800 GGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAGCGTTTCGGTG 52851
|| ||||| ||||| || |||||| || | |||||| |||| | ||||
Sbjct 15862491 GGAAAGACAAACTTCTTTGAGAAGAAGGTGGCCGAGTACCAGCGCATGGGTG 15862440
>seq2
Length=30136903
Score = 123 bits (136), Expect = 2e-23
Identities = 236/341 (69%), Gaps = 9/341 (3%)
Strand=Plus/Minus
Query 57110 CAATGCCGATGATGCCGCAGCCGAGACGGCCGCCCGAGTTGCCGGTGGTCTTGCTCAGCG 57169
||||||| |||| |||||||| | |||| |||| | ||||||||||||||||| |||
Sbjct 15750347 CAATGCCAATGACACCGCAGCCAATACGGGCGCCGGCATTGCCGGTGGTCTTGCTTAGCT 15750288
Query 57170 GATGTTCGGTGAGGCCGAGATCGTCGCGCTTCG-CGTGAACCACCAGACTGCGGCCGACG 57228
|| | ||| | || || || ||| |||| || |||| |||| || | |
Sbjct 15750287 CGTGACCACCCTTGCCCAAGTCATCA-GCGTCGGCGTGGACGACCACGGTGCGTCCTATG 15750229
Query 57229 ACGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCG 57288
| ||| | | ||||| ||||| ||| |||| | || || | ||| || |
Sbjct 15750228 ATGCTGTCGGCACCGAACAGCGTGATCTTCGAGTCGGTGATGCTGACGGCCGTGGGGCTG 15750169
Query 57289 TTGGACACTTTGGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGA 57348
| || | |||| || ||||||||||||||| | ||| || | || ||||
Sbjct 15750168 TC--AC-CGGCCGCCTGGATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCATCGGTGGGG 15750112
Query 57349 GCGCCGTGTTCGCTG--CCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGC 57406
|| ||||| || || |||| ||||||||||| ||| | |||| |||||||||||
Sbjct 15750111 GCACCGTGCTCCTTGTTCCGG--GGGTTAAAGTGGGGGCCGGACGACATGCAGCCGTTGG 15750054
Query 57407 TGGTGTCGCCGAACTCGTGAACGTGAAATCCGTGCAGGCCC 57447
|| |||| ||||||||||| || || ||||||||||| |||
Sbjct 15750053 TGTTGTCCCCGAACTCGTGCACATGGAATCCGTGCAGTCCC 15750013
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||||| || ||||| | | |||||||| || |||||||||||
Sbjct 19092552 CCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 19092611
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||| || || || |||| |||| |||||||| ||||| || ||
Sbjct 19092612 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGG 19092671
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| || || ||||| ||| || || | | || | |||||||| | |||||||
Sbjct 19092672 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACC 19092731
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | ||||| ||||||| ||||| ||||| ||||||||
Sbjct 19092732 TCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 19092778
Score = 100 bits (110), Expect = 3e-16
Identities = 166/239 (69%), Gaps = 3/239 (1%)
Strand=Plus/Plus
Query 138379 TAGCCGCAG---CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATG 138435
||| ||||| ||||| || | ||||| || ||||| | | |||||||| || |||
Sbjct 19092312 TAGGCGCAGACTCCGCCACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATG 19092371
Query 138436 TTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGT 138495
|||||||| | ||| || ||||| || || || || | |||| ||||||||
Sbjct 19092372 TTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGC 19092431
Query 138496 TGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCG 138555
||||| || || || || || ||||| ||| || || | | || | |||||||
Sbjct 19092432 TGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCG 19092491
Query 138556 GTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
| | ||||||||| | || | ||||| || |||||||| || || || ||||||||
Sbjct 19092492 GATGGCTCCACCTCCAGGGTGATGGTTTTTCCGGTCAGAGTCTTCACGAATATCTGCAT 19092550
>seq1
Length=22123056
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
|||||| || | |||||| || || || | | |||||||| || ||||||||||||
Sbjct 6630582 GCCGCCACGAAGACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGA 6630523
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| |||||| |||||| || || || |||| |||| | |||||| || || || ||
Sbjct 6630522 CAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 6630463
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || || | | || | |||||| | | ||| ||
Sbjct 6630462 AATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAAC 6630403
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| || | || || |||||||| ||||| || |||||||||||
Sbjct 6630402 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 6630355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262362780320
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