Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq5 116 3e-21 >seq5 Length=28826359 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 |||||||| | ||| || || || || ||||| ||||| || ||| | ||||| Sbjct 15755909 ACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCC 15755968 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 ||||| ||||||||| | |||||||||||||| || ||||||||||| ||||| Sbjct 15755969 AATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGG 15756028 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| ||| |||| || ||||| | ||| || || | || ||||| || Sbjct 15756029 ATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTTATGGTCTTG 15756088 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || |||||||| || ||||| Sbjct 15756089 CCCGTTAGGGTCTTTACAAAGATCTGCAT 15756117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391973865710