Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1 138 1e-27
seq5 131 2e-25
seq2 111 1e-19
>seq1
Length=22123056
Score = 138 bits (152), Expect = 1e-27
Identities = 172/236 (73%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 126878 TATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTG 126937
|||| || || || || | ||||| ||||| || | || ||||| || || || |||
Sbjct 6630590 TATAGAGCGCCGCCACGAAGACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTG 6630531
Query 126938 TAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGA 126997
|| ||| || || || || || ||||| || || ||| ||||||| |||||||||
Sbjct 6630530 TAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGA 6630471
Query 126998 TCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTA 127057
|| || || ||||||||||||||| ||| || ||||| | |||| ||||||||
Sbjct 6630470 TCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAG 6630411
Query 127058 CTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| || |||| ||| | || ||||| ||||| ||||| || |||||||||||
Sbjct 6630410 GGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 6630355
>seq5
Length=28826359
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | |||||| || | || ||||| || || || ||||| ||| |
Sbjct 28457453 CCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 28457512
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || || ||| |||||| ||||||||||| || ||
Sbjct 28457513 AGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 28457572
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||||| | |||| |||||| | ||||||
Sbjct 28457573 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 28457632
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | || ||||| || |||||||| || || || |||||
Sbjct 28457633 TCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 28457679
>seq2
Length=30136903
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 126885 CTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGC 126944
|||| || || | |||| ||||||||| | || ||||| || || || ||||| ||
Sbjct 19092322 CTCCGCCACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 19092381
Query 126945 CCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAG 127004
| ||||| ||| || ||||| || |||||| |||| | |||||||| || || |
Sbjct 19092382 AAAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGG 19092441
Query 127005 GTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064
| || |||||||||||| ||| || ||| | | || | |||||| | ||| |
Sbjct 19092442 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCA 19092501
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| || | ||| | ||||| ||||||||||| || || || ||||||||
Sbjct 19092502 CCTCCAGGGTGATGGTTTTTCCGGTCAGAGTCTTCACGAATATCTGCAT 19092550
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | |||| ||||||||| | || ||||| || || || ||||| ||
Sbjct 19092552 CCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 19092611
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || || ||| |||| | |||||||| || || ||
Sbjct 19092612 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGG 19092671
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| ||| || ||| | | || | |||||| | ||| ||
Sbjct 19092672 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACC 19092731
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | ||||| || |||| ||||| ||||| ||||||||
Sbjct 19092732 TCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 19092778
Score = 89.7 bits (98), Expect = 5e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 50660 ATGTTGCCCAGATCGCCGACGTGGCGGTCGACGGCGTTGGGAGCGCCGTGGTTGCGGCCC 50719
|||||||||| ||||| | |||||||| | || |||| || ||||| | | |
Sbjct 15750153 ATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCATCGGTGGGGGCACCGTGCTCCTTGTTC 15750094
Query 50720 AACGGATTAAAGTGCTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGAATTCGTGC 50779
|| |||||||| ||||| |||| ||||||||||| | |||| ||||| ||||||
Sbjct 15750093 CGGGGGTTAAAGTGGGGGCCGGACGACATGCAGCCGTTGGTGTTGTCCCCGAACTCGTGC 15750034
Query 50780 ACGTGGAACCCGTGAAAGCCCTTTGGAAG 50808
|| ||||| ||||| | ||||| | |||
Sbjct 15750033 ACATGGAATCCGTGCAGTCCCTTGGCAAG 15750005
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500764337440
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