Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq5 221 1e-52
>seq5
Length=28826359
Score = 221 bits (244), Expect = 1e-52
Identities = 714/1098 (65%), Gaps = 29/1098 (3%)
Strand=Plus/Plus
Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647
||||| ||| | ||||| ||||| || | || |||||||| | || || |||||||
Sbjct 15307177 ATTATAGAATCGCAAGTGGAAACTGGTAACCCATACATGCTTTTTAAGGATTCCTGCAAT 15307236
Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707
|| || | |||||| || | || || || ||||| |||||| | || | ||||||
Sbjct 15307237 AGAAAGAGCAATCAACAAAATGTTGGCACTATTAAATGCAGTAATTTATGTACAGAAATT 15307296
Query 123708 ATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA- 123766
|||| ||| | | ||| | | || || || ||||| ||||| || ||||
Sbjct 15307297 GTCGAGTACTCAGCACCTGATGAGATCGCTGTCTGCAATTTAGCTTCAATAGCACTGAAC 15307356
Query 123767 ----TCGTTGCGTCGAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAA 123822
|||| | | ||| || | | ||||| ||| | ||| |||| ||||
Sbjct 15307357 ATGTTCGTAACAGCAGAAAAAACG--TATGATTTCAAAAAATTAAAAGAAGTAACCAAAA 15307414
Query 123823 CTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGC 123882
|||| | || ||| | ||||||||||| || | || | ||| |||||| |||||
Sbjct 15307415 CTGTTGCCAAAAATCTTAACAAAATTATAGACATCAACTATTACCCTTTGCCAGAAGCCA 15307474
Query 123883 GTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGT 123942
||| ||||| | || | || |||| | || |||||||| | || ||||| |
Sbjct 15307475 AGAAGTCCAATTTAAGGCATCGTCCAATCGGTATAGGTATTCAAGGTCTAGCTGACGCTT 15307534
Query 123943 TTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACG-CAAATA 124001
| | | |||| | || || |||||||| ||||| || |||| | ||||||
Sbjct 15307535 TAATTTTAATGCGTTTTCCCTATGAAAGCGAAGAAGCCG-GTCTTTTAAACCAACAAATA 15307593
Query 124002 GCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAA--ATTCACG 124059
||||||||||||| || ||| | || || || || |||||||| || ||| |
Sbjct 15307594 TTTGAAACAATTTATTTTGGAGCTCTAGAAGCTAGTTGTGAACTTGCTCAAGCATTT--G 15307651
Query 124060 GCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGT 124119
| | || |||| || | || || || | ||| ||| ||| | || || || ||||
Sbjct 15307652 GTCCATATGAAACCTATGAAGGAAGTCCTGTAAGCAAAGGAATTCTACAATATGATATGT 15307711
Query 124120 GGAATGCTACACCGACAAATTTGTGGGACTGG---AGCGTTTTAAAACAACGCATATCGA 124176
|| || || || || || | ||||| ||| ||| | ||| || ||| |
Sbjct 15307712 GGGATAAAACTCCAACGAACCTATGGGATTGGCAAAGCCTG---AAAGAAGACATTAAAA 15307768
Query 124177 CGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAA 124236
|||||| | | || ||| |||| || ||| ||||| || ||| | ||||| ||||
Sbjct 15307769 AGCACGGAATTAGGAATTCGTTGTTAGTAGCGCCGATGCCTACAGCATCTACTGCACAAA 15307828
Query 124237 TTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGT 124296
|| | || || |||||||| ||||| || | || | ||| | || | ||||||| |
Sbjct 15307829 TTATGGGTAATAACGAATCATTCGAACCATATACCACAAATATTTATACGAGACGAGTAT 15307888
Query 124297 TAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATT 124356
|| | || || ||||||||| | ||||||||||| || || || | ||| | |
Sbjct 15307889 TATCTGGTGAATTTCAAGTGGTCAATCATCATTTATTGAGGGATTTAACAGAGTTGGACT 15307948
Query 124357 TGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCG 124416
| | ||||| | ||| || |||| ||| | | | ||| | | || || |
Sbjct 15307949 TATGGGATGATGAGATGAAAAATAAAATAATTTCCAGCAGGGGCTCCATTCAAGATATTG 15308008
Query 124417 CTTCGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAAAAT 124472
| ||||| || | || | || || ||||| || |||||||| | |||||
Sbjct 15308009 AAACTATTCCCCAAAAGGTTCGCGATCTTTATAAAACTGTATGGGAAATTTCAGTAAAAT 15308068
Query 124473 AAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTT 124532
|| |||| ||||||| | || |||| || | | ||||||||||| || |||
Sbjct 15308069 CCAC----AATTAAAATGGCTGCTGATAGAGGTGCATTTATTGATCAAAGTCAGTCGTTT 15308124
Query 124533 AACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGG 124592
|| || ||||| || |||| ||||| |||| |||||| | | | |||
Sbjct 15308125 AATGTTCACGTAGCAGAGCCCAACTACGGAAAATTGACATCCATACATTTTTTCTCCTGG 15308184
Query 124593 AGCAGC-GGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCAT 124651
| ||| ||||| ||||| || ||||| || ||| | || ||||| || ||| | || ||
Sbjct 15308185 A-AAGCTGGACTAAAAACCGGAATGTACTATTTACGCACAAAACCTGCCGCCAACGCAAT 15308243
Query 124652 TCAATTTACCGTCGACAA 124669
|||||||| ||||||||
Sbjct 15308244 ACAATTTACTGTCGACAA 15308261
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452003166099760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |