Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5 221 1e-52 >seq5 Length=28826359 Score = 221 bits (244), Expect = 1e-52 Identities = 714/1098 (65%), Gaps = 29/1098 (3%) Strand=Plus/Plus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 ||||| ||| | ||||| ||||| || | || |||||||| | || || ||||||| Sbjct 15307177 ATTATAGAATCGCAAGTGGAAACTGGTAACCCATACATGCTTTTTAAGGATTCCTGCAAT 15307236 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 || || | |||||| || | || || || ||||| |||||| | || | |||||| Sbjct 15307237 AGAAAGAGCAATCAACAAAATGTTGGCACTATTAAATGCAGTAATTTATGTACAGAAATT 15307296 Query 123708 ATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA- 123766 |||| ||| | | ||| | | || || || ||||| ||||| || |||| Sbjct 15307297 GTCGAGTACTCAGCACCTGATGAGATCGCTGTCTGCAATTTAGCTTCAATAGCACTGAAC 15307356 Query 123767 ----TCGTTGCGTCGAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAA 123822 |||| | | ||| || | | ||||| ||| | ||| |||| |||| Sbjct 15307357 ATGTTCGTAACAGCAGAAAAAACG--TATGATTTCAAAAAATTAAAAGAAGTAACCAAAA 15307414 Query 123823 CTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGC 123882 |||| | || ||| | ||||||||||| || | || | ||| |||||| ||||| Sbjct 15307415 CTGTTGCCAAAAATCTTAACAAAATTATAGACATCAACTATTACCCTTTGCCAGAAGCCA 15307474 Query 123883 GTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGT 123942 ||| ||||| | || | || |||| | || |||||||| | || ||||| | Sbjct 15307475 AGAAGTCCAATTTAAGGCATCGTCCAATCGGTATAGGTATTCAAGGTCTAGCTGACGCTT 15307534 Query 123943 TTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACG-CAAATA 124001 | | | |||| | || || |||||||| ||||| || |||| | |||||| Sbjct 15307535 TAATTTTAATGCGTTTTCCCTATGAAAGCGAAGAAGCCG-GTCTTTTAAACCAACAAATA 15307593 Query 124002 GCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAA--ATTCACG 124059 ||||||||||||| || ||| | || || || || |||||||| || ||| | Sbjct 15307594 TTTGAAACAATTTATTTTGGAGCTCTAGAAGCTAGTTGTGAACTTGCTCAAGCATTT--G 15307651 Query 124060 GCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGT 124119 | | || |||| || | || || || | ||| ||| ||| | || || || |||| Sbjct 15307652 GTCCATATGAAACCTATGAAGGAAGTCCTGTAAGCAAAGGAATTCTACAATATGATATGT 15307711 Query 124120 GGAATGCTACACCGACAAATTTGTGGGACTGG---AGCGTTTTAAAACAACGCATATCGA 124176 || || || || || || | ||||| ||| ||| | ||| || ||| | Sbjct 15307712 GGGATAAAACTCCAACGAACCTATGGGATTGGCAAAGCCTG---AAAGAAGACATTAAAA 15307768 Query 124177 CGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAA 124236 |||||| | | || ||| |||| || ||| ||||| || ||| | ||||| |||| Sbjct 15307769 AGCACGGAATTAGGAATTCGTTGTTAGTAGCGCCGATGCCTACAGCATCTACTGCACAAA 15307828 Query 124237 TTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGT 124296 || | || || |||||||| ||||| || | || | ||| | || | ||||||| | Sbjct 15307829 TTATGGGTAATAACGAATCATTCGAACCATATACCACAAATATTTATACGAGACGAGTAT 15307888 Query 124297 TAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATT 124356 || | || || ||||||||| | ||||||||||| || || || | ||| | | Sbjct 15307889 TATCTGGTGAATTTCAAGTGGTCAATCATCATTTATTGAGGGATTTAACAGAGTTGGACT 15307948 Query 124357 TGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCG 124416 | | ||||| | ||| || |||| ||| | | | ||| | | || || | Sbjct 15307949 TATGGGATGATGAGATGAAAAATAAAATAATTTCCAGCAGGGGCTCCATTCAAGATATTG 15308008 Query 124417 CTTCGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAAAAT 124472 | ||||| || | || | || || ||||| || |||||||| | ||||| Sbjct 15308009 AAACTATTCCCCAAAAGGTTCGCGATCTTTATAAAACTGTATGGGAAATTTCAGTAAAAT 15308068 Query 124473 AAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTT 124532 || |||| ||||||| | || |||| || | | ||||||||||| || ||| Sbjct 15308069 CCAC----AATTAAAATGGCTGCTGATAGAGGTGCATTTATTGATCAAAGTCAGTCGTTT 15308124 Query 124533 AACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGG 124592 || || ||||| || |||| ||||| |||| |||||| | | | ||| Sbjct 15308125 AATGTTCACGTAGCAGAGCCCAACTACGGAAAATTGACATCCATACATTTTTTCTCCTGG 15308184 Query 124593 AGCAGC-GGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCAT 124651 | ||| ||||| ||||| || ||||| || ||| | || ||||| || ||| | || || Sbjct 15308185 A-AAGCTGGACTAAAAACCGGAATGTACTATTTACGCACAAAACCTGCCGCCAACGCAAT 15308243 Query 124652 TCAATTTACCGTCGACAA 124669 |||||||| |||||||| Sbjct 15308244 ACAATTTACTGTCGACAA 15308261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003166099760