Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 145 9e-30 seq5 120 4e-22 >seq4 Length=20862834 Score = 145 bits (160), Expect = 9e-30 Identities = 294/434 (68%), Gaps = 2/434 (0%) Strand=Plus/Plus Query 127246 CTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAATGGGTT 127305 |||||| |||||||||||||| || || || ||| ||||||| |||| || || || Sbjct 15862468 CTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCATGAAATTGAAAGGATT 15862527 Query 127306 CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCGAGACGTACTC 127365 ||| | ||| | || | ||| || | || || || ||||| | ||| |||| Sbjct 15862528 CTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAGCCGATCGGCCACGAACTC 15862587 Query 127366 AATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAA 127425 ||||||| ||||| || ||||||| || || | || || || || || Sbjct 15862588 GATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATTGACGGGCAGGGCTTCAGT 15862647 Query 127426 GATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGAATAGTGTCCACCCC 127485 || |||| ||| ||| || |||||||| |||| | ||| || || ||| | | Sbjct 15862648 GAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCTCGATGATGCGCTCC-CGCT 15862706 Query 127486 AGGTCTATTGCGTAAAGTCTTGA-AGAGTTCCACAGCAAACTCTTGGTGGAGACCCTCGT 127544 || | ||| | | ||| | | ||| ||||| || ||| ||||| |||| Sbjct 15862707 TGGGCCGCTGCACTAGATGGTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGT 15862766 Query 127545 CACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACC 127604 |||||||||| || || || |||||| |||||| ||||||||||| |||||||||| || Sbjct 15862767 CACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCC 15862826 Query 127605 AGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATA 127664 | || |||| ||| ||| |||||||| || ||||| ||| || |||| | Sbjct 15862827 AAAAGATCGAGGCAAAGCTGCCGCTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAA 15862886 Query 127665 GACGCTCGGCAAAG 127678 ||||||||||||| Sbjct 15862887 TACGCTCGGCAAAG 15862900 >seq5 Length=28826359 Score = 120 bits (132), Expect = 4e-22 Identities = 186/263 (71%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 175928 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTG 175987 || ||||| ||| | || || || ||||| ||||| | ||||| || | ||||| ||| Sbjct 597189 TCCTTGCCGCCCGTCAGCCGAGTACCAAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 597248 Query 175988 TTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCACC 176046 || || || | |||| | |||| || || || || ||| | ||||||||| || || Sbjct 597249 TTCGAACCAACGTAGTTCTGGGCCAGATTCACGATGGTCATCTG-GAGGGAGACCTCGCC 597307 Query 176047 GTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCATC 176106 ||| |||||||||||| | |||||||| | | | || ||| |||||||||| ||| Sbjct 597308 GTGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTCACCTCGCG 597367 Query 176107 CTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 176166 |||| ||| | |||||| | |||||||||| | ||| ||||| ||||| || Sbjct 597368 CTTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCGGGCTTCAGGCCATC 597427 Query 176167 GGCCATGTGTGCGATGGAACGCT 176189 ||| | | |||||| |||| Sbjct 597428 CACCAGGCTGGGGATGGAGCGCT 597450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507153986960