Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 197 2e-45 >seq4 Length=20862834 Score = 197 bits (218), Expect = 2e-45 Identities = 537/810 (66%), Gaps = 24/810 (3%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| |||||||| || ||||| ||||| || |||| || || |||||||| ||| Sbjct 15862462 CACCTTCTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCATGAAATTGAA 15862521 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 || ||||| || ||| ||| | ||||| || | |||| || || ||||| Sbjct 15862522 AGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAGCCGATCGGCCAC 15862581 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 || |||||||| |||| | ||||||| || || | || | ||||| || || Sbjct 15862582 GAACTCGATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATTGACGGGCAGGGC 15862641 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA-GACACGTT 159881 ||| | || ||||||| ||| || || || || || | | |||| ||| || || | Sbjct 15862642 TTCAGTGAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCT-CGATGATGCGCT 15862700 Query 159882 CGTACCCCGGCT--TGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTG 159939 | | ||| ||| | | ||| | | ||| ||| ||||||||||||||| Sbjct 15862701 CCCGCTTGGGCCGCTGCACTAGATGGTG-----ATACATGAGCACCGCAAAGTCGCAGTG 15862755 Query 159940 CAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACG 159999 || || ||||| || ||||| | ||||||||| | | | || || ||||||| ||||| Sbjct 15862756 AAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACG 15862815 Query 160000 CGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGC 160059 | || |||||||| || | ||||| |||||||| ||||| || ||||||||||| Sbjct 15862816 CTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTAAAGAAGATTCCTTCCACGGCCGC 15862875 Query 160060 AAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGG--GTCCACCTTTTGGCC 160117 ||| || | | | ||| |||| ||| | | || || |||| ||||| Sbjct 15862876 AAAGGCAATAATACGCTCGGCAAAGTTGGC--CGATTTCGAGGATATCCAGGACATGGCC 15862933 Query 160118 CATTCAGCCTT---CTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCC 160174 || || ||||| |||| | || ||||||| ||| | || || ||||| ||| Sbjct 15862934 CAGTCCGCCTTGCGCTTTAC--AGC-CGGCATGGTCTCAATAGCATTGAACAAGTAGTCG 15862990 Query 160175 TGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACA 160234 |||||| | ||| || || |||| ||| |||||| || | ||||||| Sbjct 15862991 CGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCGGAGTGCACA 15863050 Query 160235 TTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCC-AGATACTGCACCTCCTG 160293 || || ||||| ||||| ||| |||||| | |||||| ||| |||||||||||| Sbjct 15863051 TTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCCGTGAT-CTGCACCTCCTG 15863109 Query 160294 TGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAA 160353 | || | | ||||||| | ||||| | ||||| | ||| || ||||| || | Sbjct 15863110 ACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAGAAGGCTAG 15863169 Query 160354 CACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTC 160413 ||| || ||||| || | | ||||| | |||| | |||||| ||| |||| Sbjct 15863170 CACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGAC---GGGCCCAGTCCGTCGCGTC 15863226 Query 160414 TTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 | | | ||| ||||||||| || |||| Sbjct 15863227 CTTCGATAGATCCACCTCTTCCACGGTCCA 15863256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795155140363360