Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq5 152 1e-31
seq2 150 4e-31
seq1 134 3e-26
>seq5
Length=28826359
Score = 152 bits (168), Expect = 1e-31
Identities = 165/218 (76%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| || ||||||||||| |||| ||||||||| | || ||| | |||||
Sbjct 28457468 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 28457527
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||||||||| ||||||||||| || || ||| || || |||
Sbjct 28457528 TCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 28457587
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| |||||| | | || || ||||| ||||| |||
Sbjct 28457588 TGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTC 28457647
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
|| || |||||||||||||| || ||||| ||||||
Sbjct 28457648 TTGCCAGTGAGAGTTTTCACGAAGATTTG---CATTTT 28457682
>seq2
Length=30136903
Score = 150 bits (166), Expect = 4e-31
Identities = 170/227 (75%), Gaps = 3/227 (1%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || | ||||||||||||||||| |||| ||||||||| | | |||
Sbjct 19092558 CGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTG 19092617
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| ||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 19092618 CGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCC 19092677
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||||||| || | |||||| | || || || ||||
Sbjct 19092678 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGG 19092737
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
||||| || || || || | ||||||||||| || || ||||||
Sbjct 19092738 GTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTG---CATTTT 19092781
Score = 145 bits (160), Expect = 2e-29
Identities = 163/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || | ||||||||||||||||| |||| ||||||||| | | |||
Sbjct 19092330 CGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTG 19092389
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| ||||||||||| || ||||||||||||||||||||||| || |||||
Sbjct 19092390 CGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCC 19092449
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||||||| || | |||||| | || || || ||||
Sbjct 19092450 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGG 19092509
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || || ||||| ||||| || || ||
Sbjct 19092510 GTGATGGTTTTTCCGGTCAGAGTCTTCACGAATATCTG 19092547
>seq1
Length=22123056
Score = 134 bits (148), Expect = 3e-26
Identities = 168/230 (73%), Gaps = 3/230 (1%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | ||| | ||| |||||||| |||| ||||||||| | ||||||
Sbjct 6630575 CGAAGACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTA 6630516
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||| || ||||||||||| ||||||||||| | ||||||||| || || ||| ||
Sbjct 6630515 CGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCC 6630456
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || |||| |||||| | | || || || |
Sbjct 6630455 TCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGG 6630396
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGC 199638
||||| ||||| || || || |||||||| ||||| || |||||| ||
Sbjct 6630395 GTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTG---CATTTTGGC 6630349
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
||||||||||| |||||| |||| || ||| | |||||| |||| |||||| |||||||
Sbjct 6630484 ATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAACATCCAGAAG 6630543
Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029
||||| ||| | ||| | || ||| | |||||
Sbjct 6630544 GAGTCCACTTTGCACTTGGTATTGCGTCTTCG 6630575
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178921509370402
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |