Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq2 149 7e-31
seq1 149 7e-31
seq5 141 1e-28
>seq2
Length=30136903
Score = 149 bits (164), Expect = 7e-31
Identities = 165/220 (75%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| ||||| ||| | || |||||| ||||| |||||||| || |||||||| |
Sbjct 19092563 ACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCC 19092622
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || ||||||||||||||||| || | ||||||||||| | || | | ||||||
Sbjct 19092623 ATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTT 19092682
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| |||||| ||| | || | | |||||| | ||||| |||| |||||
Sbjct 19092683 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGAT 19092742
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|||||| || |||| ||||| |||||||| |||||||||
Sbjct 19092743 GGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTG 19092782
Score = 129 bits (142), Expect = 7e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| ||||| ||| | || |||||| ||||| |||||||| || |||||||| |
Sbjct 19092335 ACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCC 19092394
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || ||||||||||| ||||| || | ||||||||||| | || | | ||||||
Sbjct 19092395 ATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTT 19092454
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| |||||| ||| | || | | |||||| | ||||| |||| |||||
Sbjct 19092455 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGAT 19092514
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||||| || ||||| || || || || || |||||
Sbjct 19092515 GGTTTTTCCGGTCAGAGTCTTCACGAATATCTGCAT 19092550
>seq1
Length=22123056
Score = 149 bits (164), Expect = 7e-31
Identities = 165/220 (75%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
|||||| |||| ||||| || |||||| ||||| ||||||||||| | ||| || |
Sbjct 6630570 ACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCC 6630511
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || ||||||||||||||||| ||||| |||||||| || | || | || ||||||
Sbjct 6630510 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTT 6630451
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| |||||| ||||| || | | ||||| | || || || | |||||
Sbjct 6630450 GTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGAT 6630391
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
||| ||||| ||||| ||||| || || || |||||||||
Sbjct 6630390 GGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCATTTTG 6630351
>seq5
Length=28826359
Score = 141 bits (156), Expect = 1e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| |||| || |||||| ||||| ||||||||||| |||||||| | || ||
Sbjct 28457470 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTC 28457529
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
|||||||| |||||||| |||| |||||||| || | || | || ||||||||||
Sbjct 28457530 CAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 28457589
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||| ||||| || | | ||||| | || || |||| |||||||| ||
Sbjct 28457590 GATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTT 28457649
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
||| || || ||||| || ||||||||||||||
Sbjct 28457650 GCCAGTGAGAGTTTTCACGAAGATTTGCATTTT 28457682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238357607120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |