Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 149 7e-31 seq1 149 7e-31 seq5 141 1e-28 >seq2 Length=30136903 Score = 149 bits (164), Expect = 7e-31 Identities = 165/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| ||| | || |||||| ||||| |||||||| || |||||||| | Sbjct 19092563 ACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCC 19092622 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||||||||| || | ||||||||||| | || | | |||||| Sbjct 19092623 ATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTT 19092682 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||| | || | | |||||| | ||||| |||| ||||| Sbjct 19092683 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGAT 19092742 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||||| || |||| ||||| |||||||| ||||||||| Sbjct 19092743 GGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTG 19092782 Score = 129 bits (142), Expect = 7e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| ||| | || |||||| ||||| |||||||| || |||||||| | Sbjct 19092335 ACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCC 19092394 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||| ||||| || | ||||||||||| | || | | |||||| Sbjct 19092395 ATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTT 19092454 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||| | || | | |||||| | ||||| |||| ||||| Sbjct 19092455 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGAT 19092514 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || ||||| || || || || || ||||| Sbjct 19092515 GGTTTTTCCGGTCAGAGTCTTCACGAATATCTGCAT 19092550 >seq1 Length=22123056 Score = 149 bits (164), Expect = 7e-31 Identities = 165/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| ||||| || |||||| ||||| ||||||||||| | ||| || | Sbjct 6630570 ACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCC 6630511 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||||||||| ||||| |||||||| || | || | || |||||| Sbjct 6630510 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTT 6630451 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||||| || | | ||||| | || || || | ||||| Sbjct 6630450 GTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGAT 6630391 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| ||||| ||||| ||||| || || || ||||||||| Sbjct 6630390 GGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCATTTTG 6630351 >seq5 Length=28826359 Score = 141 bits (156), Expect = 1e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || |||||| ||||| ||||||||||| |||||||| | || || Sbjct 28457470 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTC 28457529 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||| |||||||| |||| |||||||| || | || | || |||||||||| Sbjct 28457530 CAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 28457589 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| || | | ||||| | || || |||| |||||||| || Sbjct 28457590 GATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTT 28457649 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||| || || ||||| || |||||||||||||| Sbjct 28457650 GCCAGTGAGAGTTTTCACGAAGATTTGCATTTT 28457682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238357607120