Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4 360 2e-94 seq2 156 4e-33 seq5 154 1e-32 seq1 132 5e-26 >seq4 Length=20862834 Score = 360 bits (398), Expect = 2e-94 Identities = 579/825 (70%), Gaps = 8/825 (1%) Strand=Plus/Plus Query 132607 TGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTC 132666 || || ||| ||||||| |||||||| || || || ||||| |||| || || | | | Sbjct 15862451 TGGTACTCGGCCACCTTCTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCC 15862510 Query 132667 ATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGC 132726 || |||| || || || ||||||||| ||| | || || | |||||| Sbjct 15862511 ATGAAATTGAAAGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAGC 15862570 Query 132727 CTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGC 132786 | |||||||||||||||||||| || |||||| | || || | || | || | Sbjct 15862571 CGATCGGCCACGAACTCGATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATTG 15862630 Query 132787 ACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCC 132846 || ||||| ||||| ||||| || |||||||| | || || || ||| ||| || Sbjct 15862631 ACGGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCTCG 15862690 Query 132847 CTAACGCGCGCCGCGCTCGG-CCGTTGCACCAAATGCTTGAACATCAAGCAA-GCAAAGT 132904 | | |||| || |||| || ||| ||||| | ||| | |||| | ||| ||||||| Sbjct 15862691 ATGATGCGCTCC-CGCTTGGGCCGCTGCACTAGATGGTGATACATGA-GCACCGCAAAGT 15862748 Query 132905 CGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGA 132964 |||| || | || ||||| | ||| || || |||||| ||| |||| |||||||||| Sbjct 15862749 CGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGA 15862808 Query 132965 GGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGA 133024 | || || || || |||||||| || | ||| || ||||| |||||||| || || | Sbjct 15862809 GACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTAAAGAAGATTCCTTCCA 15862868 Query 133025 CGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCA 133084 ||||||| || || | | |||||| | || |||| ||| || |||||| || Sbjct 15862869 CGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATCCAGGACA 15862928 Query 133085 GCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGA 133144 ||||| || ||||| || || |||||| || || || || || ||||| | | Sbjct 15862929 TGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAACAA--GTA 15862986 Query 133145 GTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTG 133202 || | || | | || | | | ||||||||| ||||| ||||| || ||||| Sbjct 15862987 GTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCGGAGTG 15863046 Query 133203 TACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTC 133262 || ||||||||||| || || |||||||| ||||| || ||||| | |||||| || Sbjct 15863047 CACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCCGTGATCTGCACCTC 15863106 Query 133263 TTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGC 133322 ||| || |||||||||||||| ||||| || |||||||| ||| ||||| ||||| Sbjct 15863107 CTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAGAAGGC 15863166 Query 133323 CAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTC 133382 ||||| || ||| || | |||||||||||| | | || ||||||| || ||| Sbjct 15863167 TAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGTCGCGTC 15863226 Query 133383 CTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 ||| || || |||||||| || |||||||| || || ||||| || Sbjct 15863227 CTTCGATAGATCCACCTCTTCCACGGTCCAGAAGGAGGCCTCCGC 15863271 >seq2 Length=30136903 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || || || || || |||||||||||| | || || ||| | || Sbjct 19092550 ATGCAGATATTCGTGAAGACTCTGACCGGAAAAACCATCACCCTGGAGGTGGAGCCATCC 19092491 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| |||||||| ||| | ||||| Sbjct 19092490 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCA 19092432 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||| |||||||| || | ||||| || |||||||| Sbjct 19092431 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAA 19092372 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| || ||||||||||||||| | | ||||| Sbjct 19092371 CATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCGTCTCCGTGGCGG 19092324 Score = 150 bits (166), Expect = 2e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || ||||| | || || |||||||||||| | || || ||| | Sbjct 19092781 AAAATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAGCCA 19092722 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || | || |||| ||||| |||||||| ||| | || Sbjct 19092721 TCCGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGA 19092663 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | ||| ||||| |||||||| || | ||||| || ||||| Sbjct 19092662 CCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTA 19092603 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| ||||| |||| || ||||||||||||||| Sbjct 19092602 CAACATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCGT 19092563 Score = 120 bits (132), Expect = 3e-22 Identities = 233/338 (69%), Gaps = 7/338 (2%) Strand=Plus/Minus Query 107496 CGGCCGCCCGAGTTGCCGGTGGTCTTGCTCAACGGATGGTCGGTGAGGCCCAGATCGTCC 107555 ||| |||| | ||||||||||||||||| | | || | ||||| || || Sbjct 15750321 CGGGCGCCGGCATTGCCGGTGGTCTTGCTTAGCTCGTGACCACCCTTGCCCAAGTCATCA 15750262 Query 107556 CTGTCCGTGTGCACGACCAGACTCCGTCCGATGATGCTGTGCGGGCCGTACAAAGTCA-C 107614 ||| | ||| ||||||| | ||||| |||||||||| | ||| ||| || | | Sbjct 15750261 GCGTCGGCGTGGACGACCACGGTGCGTCCTATGATGCTGTCGGCACCGAACAGCGTGATC 15750202 Query 107615 GACGCCGTCCGTCAAGCTCACCTCGGTGAGCGCGTCGCGGCCCGCCGACTTGAGGTTGCC 107674 || ||| || | ||| || | ||| | ||| | | ||||| | || |||||| Sbjct 15750201 TTCGA-GTCGGTGATGCTGACGGCCGTGGGGCTGTCACCGGCCGCC---TGGATGTTGCC 15750146 Query 107675 CAGGTCGCCGACGTGCCTGATCTCGGCGTCGGGCGCGCCGTGGTCGCGCTTCGTCGGGTT 107734 || |||||| | ||| | | |||| || ||| || ||||| || ||| ||||| Sbjct 15750145 CAAGTCGCCCAAGTGGCGGTTCTCATCGGTGGGGGCACCGTGCTCCTTGTTCCGGGGGTT 15750086 Query 107735 GAAATGCTCGCCGGCCGACGTGCAGCCGTTGCTCGCGTCGCCGAACTCGTGCACGTGGAA 107794 || || ||||| |||| ||||||||||| | ||| |||||||||||||| ||||| Sbjct 15750085 AAAGTGGGGGCCGGACGACATGCAGCCGTTGGTGTTGTCCCCGAACTCGTGCACATGGAA 15750026 Query 107795 GCCGTGCAGGCCGCGCGGC-AGGCCGAGCACGTAGCCG 107831 |||||||| || | ||| ||||| ||||| | |||| Sbjct 15750025 TCCGTGCAGTCC-CTTGGCAAGGCCCAGCACCTCGCCG 15749989 >seq5 Length=28826359 Score = 154 bits (170), Expect = 1e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| ||||| ||||| ||||| ||||||||| | || |||||| || Sbjct 28457682 AAAATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCC 28457623 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| ||||| |||||| | || Sbjct 28457622 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 28457563 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| || || |||||||| || | ||||| || ||||||| Sbjct 28457562 CAGCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 28457503 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| |||| ||||| |||||||| || Sbjct 28457502 AACATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCG 28457465 >seq1 Length=22123056 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| ||||| || || ||||| ||||||||| |||| || ||| || Sbjct 6630352 AAAATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCC 6630411 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| ||||| |||||| | || Sbjct 6630412 TCGGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 6630471 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | || | ||| ||||| |||||||| |||| || || | ||||||| Sbjct 6630472 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTAC 6630531 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| | || |||| ||||| ||||| | | |||||| Sbjct 6630532 AACATCCAGAAGGAGTCCACTTTGCACTTGGTATTGCGTCTTCGTGGCGGC 6630582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172762487040