Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq4 360 2e-94
seq2 156 4e-33
seq5 154 1e-32
seq1 132 5e-26
>seq4
Length=20862834
Score = 360 bits (398), Expect = 2e-94
Identities = 579/825 (70%), Gaps = 8/825 (1%)
Strand=Plus/Plus
Query 132607 TGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTC 132666
|| || ||| ||||||| |||||||| || || || ||||| |||| || || | | |
Sbjct 15862451 TGGTACTCGGCCACCTTCTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCC 15862510
Query 132667 ATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGC 132726
|| |||| || || || ||||||||| ||| | || || | ||||||
Sbjct 15862511 ATGAAATTGAAAGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAGC 15862570
Query 132727 CTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGC 132786
| |||||||||||||||||||| || |||||| | || || | || | || |
Sbjct 15862571 CGATCGGCCACGAACTCGATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATTG 15862630
Query 132787 ACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCC 132846
|| ||||| ||||| ||||| || |||||||| | || || || ||| ||| ||
Sbjct 15862631 ACGGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCTCG 15862690
Query 132847 CTAACGCGCGCCGCGCTCGG-CCGTTGCACCAAATGCTTGAACATCAAGCAA-GCAAAGT 132904
| | |||| || |||| || ||| ||||| | ||| | |||| | ||| |||||||
Sbjct 15862691 ATGATGCGCTCC-CGCTTGGGCCGCTGCACTAGATGGTGATACATGA-GCACCGCAAAGT 15862748
Query 132905 CGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGA 132964
|||| || | || ||||| | ||| || || |||||| ||| |||| ||||||||||
Sbjct 15862749 CGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGA 15862808
Query 132965 GGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGA 133024
| || || || || |||||||| || | ||| || ||||| |||||||| || || |
Sbjct 15862809 GACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTAAAGAAGATTCCTTCCA 15862868
Query 133025 CGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCA 133084
||||||| || || | | |||||| | || |||| ||| || |||||| ||
Sbjct 15862869 CGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATCCAGGACA 15862928
Query 133085 GCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGA 133144
||||| || ||||| || || |||||| || || || || || ||||| | |
Sbjct 15862929 TGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAACAA--GTA 15862986
Query 133145 GTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTG 133202
|| | || | | || | | | ||||||||| ||||| ||||| || |||||
Sbjct 15862987 GTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCGGAGTG 15863046
Query 133203 TACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTC 133262
|| ||||||||||| || || |||||||| ||||| || ||||| | |||||| ||
Sbjct 15863047 CACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCCGTGATCTGCACCTC 15863106
Query 133263 TTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGC 133322
||| || |||||||||||||| ||||| || |||||||| ||| ||||| |||||
Sbjct 15863107 CTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAGAAGGC 15863166
Query 133323 CAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTC 133382
||||| || ||| || | |||||||||||| | | || ||||||| || |||
Sbjct 15863167 TAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGTCGCGTC 15863226
Query 133383 CTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427
||| || || |||||||| || |||||||| || || ||||| ||
Sbjct 15863227 CTTCGATAGATCCACCTCTTCCACGGTCCAGAAGGAGGCCTCCGC 15863271
>seq2
Length=30136903
Score = 156 bits (172), Expect = 4e-33
Identities = 173/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| |||||||| || || || || || |||||||||||| | || || ||| | ||
Sbjct 19092550 ATGCAGATATTCGTGAAGACTCTGACCGGAAAAACCATCACCCTGGAGGTGGAGCCATCC 19092491
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| |||||||| ||| | |||||
Sbjct 19092490 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCA 19092432
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | ||| ||||| |||||||| || | ||||| || ||||||||
Sbjct 19092431 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAA 19092372
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| |||| || ||||||||||||||| | | |||||
Sbjct 19092371 CATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCGTCTCCGTGGCGG 19092324
Score = 150 bits (166), Expect = 2e-31
Identities = 167/220 (76%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|||||||| || || || ||||| | || || |||||||||||| | || || ||| |
Sbjct 19092781 AAAATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAGCCA 19092722
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|||||| | | | |||| | || | || |||| ||||| |||||||| ||| | ||
Sbjct 19092721 TCCGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGA 19092663
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||||| ||||| | ||| ||||| |||||||| || | ||||| || |||||
Sbjct 19092662 CCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTA 19092603
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||||||| ||||| |||| || |||||||||||||||
Sbjct 19092602 CAACATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCGT 19092563
Score = 120 bits (132), Expect = 3e-22
Identities = 233/338 (69%), Gaps = 7/338 (2%)
Strand=Plus/Minus
Query 107496 CGGCCGCCCGAGTTGCCGGTGGTCTTGCTCAACGGATGGTCGGTGAGGCCCAGATCGTCC 107555
||| |||| | ||||||||||||||||| | | || | ||||| || ||
Sbjct 15750321 CGGGCGCCGGCATTGCCGGTGGTCTTGCTTAGCTCGTGACCACCCTTGCCCAAGTCATCA 15750262
Query 107556 CTGTCCGTGTGCACGACCAGACTCCGTCCGATGATGCTGTGCGGGCCGTACAAAGTCA-C 107614
||| | ||| ||||||| | ||||| |||||||||| | ||| ||| || | |
Sbjct 15750261 GCGTCGGCGTGGACGACCACGGTGCGTCCTATGATGCTGTCGGCACCGAACAGCGTGATC 15750202
Query 107615 GACGCCGTCCGTCAAGCTCACCTCGGTGAGCGCGTCGCGGCCCGCCGACTTGAGGTTGCC 107674
|| ||| || | ||| || | ||| | ||| | | ||||| | || ||||||
Sbjct 15750201 TTCGA-GTCGGTGATGCTGACGGCCGTGGGGCTGTCACCGGCCGCC---TGGATGTTGCC 15750146
Query 107675 CAGGTCGCCGACGTGCCTGATCTCGGCGTCGGGCGCGCCGTGGTCGCGCTTCGTCGGGTT 107734
|| |||||| | ||| | | |||| || ||| || ||||| || ||| |||||
Sbjct 15750145 CAAGTCGCCCAAGTGGCGGTTCTCATCGGTGGGGGCACCGTGCTCCTTGTTCCGGGGGTT 15750086
Query 107735 GAAATGCTCGCCGGCCGACGTGCAGCCGTTGCTCGCGTCGCCGAACTCGTGCACGTGGAA 107794
|| || ||||| |||| ||||||||||| | ||| |||||||||||||| |||||
Sbjct 15750085 AAAGTGGGGGCCGGACGACATGCAGCCGTTGGTGTTGTCCCCGAACTCGTGCACATGGAA 15750026
Query 107795 GCCGTGCAGGCCGCGCGGC-AGGCCGAGCACGTAGCCG 107831
|||||||| || | ||| ||||| ||||| | ||||
Sbjct 15750025 TCCGTGCAGTCC-CTTGGCAAGGCCCAGCACCTCGCCG 15749989
>seq5
Length=28826359
Score = 154 bits (170), Expect = 1e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
||||||||||| ||||| ||||| ||||| ||||| ||||||||| | || |||||| ||
Sbjct 28457682 AAAATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCC 28457623
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | | || | || |||| ||||| ||||| |||||| | ||
Sbjct 28457622 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 28457563
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| || || | ||| || || |||||||| || | ||||| || |||||||
Sbjct 28457562 CAGCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 28457503
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||||| ||||| |||| ||||| |||||||| ||
Sbjct 28457502 AACATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCG 28457465
>seq1
Length=22123056
Score = 132 bits (146), Expect = 5e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|||||||| || ||||| ||||| || || ||||| ||||||||| |||| || ||| ||
Sbjct 6630352 AAAATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCC 6630411
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | | || | || |||| ||||| ||||| |||||| | ||
Sbjct 6630412 TCGGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 6630471
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| | || | ||| ||||| |||||||| |||| || || | |||||||
Sbjct 6630472 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTAC 6630531
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||||| ||||| | || |||| ||||| ||||| | | ||||||
Sbjct 6630532 AACATCCAGAAGGAGTCCACTTTGCACTTGGTATTGCGTCTTCGTGGCGGC 6630582
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172762487040
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