Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq5 118 4e-21 >seq5 Length=28826359 Score = 118 bits (130), Expect = 4e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || || || || || |||||||| || ||| | || Sbjct 15756117 ATGCAGATCTTTGTAAAGACCCTAACGGGCAAGACCATAACTCTTGAGGTCGAACCTTCG 15756058 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||| | | ||| || || || || || |||||||||||||| |||||| Sbjct 15756057 GATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAA 15755998 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || ||| | || || ||| | |||||||| |||| || | |||||||| Sbjct 15755997 CAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACACTGTCTGATTATAAC 15755938 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTA 391259 ||| | ||||| | || | || |||||| Sbjct 15755937 ATTCAGAAGGAGTCCACCTTGCATTTAGTA 15755908 Score = 84.2 bits (92), Expect = 9e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 502395 ATGCCAACAGCATCTACATCTCAACTATTAGGCAATTATGAATCATTTGAACCATTTACT 502454 ||||| ||||||||||| | ||| | | || ||| | |||||||| ||||||| ||| Sbjct 15307804 ATGCCTACAGCATCTACTGCACAAATTATGGGTAATAACGAATCATTCGAACCATATACC 15307863 Query 502455 TCTAATATATATACTAGAAGAACTTTAGCAGGTGAATTTATAGTTGTTAATAAACATTTA 502514 | ||||| ||||| ||| || ||| | ||||||||| ||| || ||| | |||||| Sbjct 15307864 ACAAATATTTATACGAGACGAGTATTATCTGGTGAATTTCAAGTGGTCAATCATCATTTA 15307923 Query 502515 ATAAATGATTT 502525 | | ||||| Sbjct 15307924 TTGAGGGATTT 15307934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975718248116648