Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq3 190 2e-42
>seq3
Length=33007066
Score = 190 bits (210), Expect = 2e-42
Identities = 566/869 (65%), Gaps = 12/869 (1%)
Strand=Plus/Plus
Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910
|||| | || ||||||| ||| |||| ||||| | | || || || || || || |
Sbjct 2875320 AATCGGTACCCTCGAACAGAGAGTCAATCTCAATGCTGGCCTGGGTGGACGACGAGAGGG 2875379
Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA----AGGCTT-TTGCTGATTG 517965
||| || || || || || || || | || | || | | |||| |||||| |
Sbjct 2875380 TACGCTTTGCGCGCTCGCAGGCGGTGCGCAGACGACGAAGAGCACGCTTGTTGCTGGT-- 2875437
Query 517966 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT 518025
|| || | || | || | |||||| || | ||| | || || ||||| ||
Sbjct 2875438 ---CAGGTCCTTCTTGTGCTTGCGCTTGAACTCCTGCACAAAGTGGGTCACTAGACGGTT 2875494
Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085
|| ||||| ||||| || | | |||| || | ||||| | | || | ||| | ||
Sbjct 2875495 GTCGAAATCCTCACCACCAAGATGGGTATCACCGGCCGTAGATTTGACCTCGAAGATGCC 2875554
Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145
|| || | |||| || | ||||| ||| || ||||||| ||| |||||||| ||
Sbjct 2875555 GTCATCGATCGACAGAATGGACACATCGAAGGTACCGCCACCCAGATCGAAAATAAGCAC 2875614
Query 518146 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205
|| || | || || || || ||||| || | |||||| || || || ||
Sbjct 2875615 GTTGCGCTCACCAACAGCCTTCTTGTCCAGGCCATAGGCGATAGCAGCGGCCGTGGGCTC 2875674
Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265
|| || || | || ||||| | || ||||| | || ||||| || || || || |
Sbjct 2875675 GTTGATGATACGCAGCACATTCAATCCGGCAATGGTACCGGCATCCTTGGTCGCCTGACG 2875734
Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAAT 518325
|| || ||||| || || || || ||||| || ||||||| | ||| || || |
Sbjct 2875735 CTGAGAGTCGTTGAAGTAGGCTGGCACAGTGATGACGGCATTCGACACTGTCTTGCCCAG 2875794
Query 518326 ATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGA 518385
|| || || || | |||||||| | || | ||| || || || | || |||||
Sbjct 2875795 GTACGCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGAGGAGATCTCCTC-GGGGA 2875853
Query 518386 ATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 518444
| | | ||| |||| | || | || |||| | || || | | ||| | |
Sbjct 2875854 AGAAGGTCTTCTTCTCATCCTTGTACGTAACCTCAATCTTGGGCTTGCCATCTACACTGA 2875913
Query 518445 TAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 518504
|| | || ||||||| ||||| || || || ||| || | ||| | | ||
Sbjct 2875914 CCACATCGAAGGGCCAGTGCTTCATGTCAGACTGCACAGCAGAATCCTCAAACTTGCGAC 2875973
Query 518505 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGG 518564
|||| | || || ||||| || || || | |||||| || || || | |||| ||||
Sbjct 2875974 CAATCAGACGCTTGGCATCGAAGATCGTTTGGGTTGGGTTCATCGCCACCTGATTCTTGG 2876033
Query 518565 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 518624
| ||||| ||||||| | | || || || || || | |||||| ||||| || || ||||
Sbjct 2876034 CGGCATCACCAATCAAACGCTCCGTGTCCGTGAAGGCAACATAGGATGGTGTCGTACGAT 2876093
Query 518625 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAA 518684
|||| || || || ||||| || || || || |||| || | ||||| ||||||
Sbjct 2876094 TACCCTGGTCGTTGGCAATGATCTCGACCTTGCCATGCTGGAACACACCCACACAAGAGT 2876153
Query 518685 AAGTTGTTCCTAAATCAATACCAATAGCA 518713
| ||||| || ||||||||||||| ||||
Sbjct 2876154 AGGTTGTGCCCAAATCAATACCAACAGCA 2876182
Score = 107 bits (118), Expect = 1e-17
Identities = 447/703 (64%), Gaps = 2/703 (0%)
Strand=Plus/Minus
Query 518012 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 518071
|| || ||||| || || ||||| |||| || | | |||| || | ||||| | |
Sbjct 3146160 GTCACTAGACGGTTGTCGAAATCCGCACCACCAAGATGGGTATCACCGGCCGTAGATTTG 3146101
Query 518072 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATA 518131
|| | ||| | ||||| | | || | || | ||||| ||| || ||||||| |
Sbjct 3146100 ACCTTGAAGATGCCATCATTGATCGAAAGAATGGACACATCGAAGGTACCGCCACCCAGA 3146041
Query 518132 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 518191
|| |||||||| || || | | || || || || ||||| || | ||||
Sbjct 3146040 TCGAAAATAAGCACGTTGCGCTTACCAACAGCCTTCTTGTCCAGGCCATAGGCGATAGCA 3145981
Query 518192 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 518251
|| || || || || || || || | || ||||| | ||| || || | || |||||
Sbjct 3145980 GCGGCCGTGGGCTCGTTGATGATACGCAGCACATTCAAACCGGCGATGGTACCGGCATCC 3145921
Query 518252 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTT 518311
|| || || || | || || ||||| || | || || |||| || || |||| ||
Sbjct 3145920 TTGGTAGCCTGACGCTGCGAGTCGTTGAAGTGGGCTGGCACAGAGATGACAGCATTGGTC 3145861
Query 518312 ACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAA 518371
|| || || | || | || || | |||||||| | || | ||| | ||
Sbjct 3145860 ACCGTCTTGCCCAGGTACTCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGCAGAG 3145801
Query 518372 ATTTGTTCTGGGGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 518430
|| | || || ||| | | ||| || | | || | || |||| | || ||
Sbjct 3145800 ATCTCCTC-GGCGAAGAAGGTCTTTTTCTCGTCCTTGTACGTAACCTCAATCTTAGGCTT 3145742
Query 518431 ATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTC 518490
| ||| | | || | || ||||||| ||||| || || || ||| ||
Sbjct 3145741 GCCGTCTACACTGACCACATCGAAGGGCCAGTGCTTCATGTCAGACTGCACAGCAGAATC 3145682
Query 518491 ATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGC 518550
||||| | | |||||| | || || | ||| || || | | | ||| | | ||
Sbjct 3145681 CTTAAACTTGCGACCAATCAGACGCTTCGAATCGAAGATCCTGTGGTGTGGGTGTACCGC 3145622
Query 518551 AGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGA 518610
| || | ||||| ||||| ||||| | | || || || || || | |||||| ||
Sbjct 3145621 CACCTGGTTCTTGGCGGCATCACCAATTAAGCGCTCCGTGTCCGTGAAGGCAACATAGGA 3145562
Query 518611 TGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATAC 518670
|| || || |||||||| || || || ||||| || || || || ||||| || | ||
Sbjct 3145561 TGATGTGGTACGATTACCATGGTCGTTGGCAATGATCTCGACCTTGCCATTCTGGAACAC 3145502
Query 518671 ACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713
||| ||||| | |||||| || ||||||||||||||||||
Sbjct 3145501 ACCCACACAGCAGTGAGTTGTGCCCAAATCAATACCAATAGCA 3145459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780822102260236
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |