Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq4 105 8e-18 >seq5 Length=28826359 Score = 107 bits (118), Expect = 2e-18 Identities = 181/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 176021 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 176080 ||||| || ||| | || || |||||||||||||| | |||||| || | ||||| ||| Sbjct 597189 TCCTTGCCGCCCGTCAGCCGAGTACCAAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 597248 Query 176081 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCG 176140 || ||||| | ||||| | |||| || || || || | ||| ||||| || ||| Sbjct 597249 TTCGAACCAACGTAGTTCTGGGCCAGATTCACGATGGTCATCTGGAGGGAGACCTCGCCG 597308 Query 176141 TGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCC 176200 |||||||| || | |||| || || | | | || ||| ||||| |||| ||| | Sbjct 597309 TGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTCACCTCGCGC 597368 Query 176201 TTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCC 176260 ||| || | ||| || | | |||| |||||||| || ||||| || |||||| Sbjct 597369 TTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCGGGCTTCAGGCCATCC 597428 Query 176261 GCCATGTGTGCGATAGAACGCT 176282 ||| | | ||| || |||| Sbjct 597429 ACCAGGCTGGGGATGGAGCGCT 597450 >seq4 Length=20862834 Score = 105 bits (116), Expect = 8e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 |||||| ||||| | | || |||||| || || || |||||||| || ||| Sbjct 15862900 CTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGCGGCAGCTT 15862841 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 | | || | |||||| |||||||| ||||||||||| ||||| |||||||||||| Sbjct 15862840 TGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGA 15862781 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG 102335 ||| ||||| |||||||| || || ||| || ||||||||| Sbjct 15862780 GCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGGTG 15862738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742353444320