Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq5 123 3e-23
seq4 91.5 2e-13
>seq5
Length=28826359
Score = 123 bits (136), Expect = 3e-23
Identities = 451/699 (65%), Gaps = 13/699 (2%)
Strand=Plus/Minus
Query 105925 TCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTG 105984
|| |||| ||| || || || || || ||||| || |||| |||||||||| |||||
Sbjct 15307884 TCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGATTCGTTATTACCCATAATTTG 15307825
Query 105985 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTT 106044
||| || || ||||| ||||| || || | || | || | || || | | ||
Sbjct 15307824 TGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAATTCCTAATTCCGTGCTTTTT 15307765
Query 106045 GATGCGTTCCTTGAGAACATCCCAGTCG--TAGTTGAGCTTG-GTTTCACCTTCCCACAT 106101
||| ||| || || | ||| || ||| | | | | |||| | ||||||||
Sbjct 15307764 AATGTCTTCTTTCAGGCTTTGCCAATCCCATAGGTTCGTTGGAGTTTTA---TCCCACAT 15307708
Query 106102 ATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTG 106161
|||| |||| || | |||| | ||| || ||| | || ||||| | |||
Sbjct 15307707 ATCATATTGTAGAATTCCTTTGCTTACAGGACTTCCTTCATAGGTTTCATATGGACCAAA 15307648
Query 106162 GGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACG 106221
|||| ||| | |||||| || || || || | | | ||| || |||||||| || |
Sbjct 15307647 TGCTTGAGCAAGTTCACAACTAGCTTCTAGAGCTCCAAAATAAATTGTTTCAAATATTTG 15307588
Query 106222 AGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATC 106281
|| | |||||| || ||| | | | || ||||| || | ||
Sbjct 15307587 TTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAACGCATTAAAATTAAAGCGTC 15307528
Query 106282 CGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGT 106341
|| |||||||||| ||| | ||| || || | || | | ||| ||||| || |
Sbjct 15307527 AGCTAGACCTTGAATACCTATACCGATTGGACGATGCCTTAAATTGGACTTCTTGGCT-T 15307469
Query 106342 CT--CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 106399
|| ||| ||| ||| | || |||| || | | ||| |||||||||| |||| | ||
Sbjct 15307468 CTGGCAAAGGG-TAATAGTTGATGTCTATAATTTTGTTAAGATTTTTGGCAACAGTTTTG 15307410
Query 106400 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA 106459
|| | ||| | | ||||| ||||| | || | ||| | | || || |
Sbjct 15307409 GTTACTTCTTTTAATTTTTTGAAATCATACGTTT---TTTCTGCTGTTACGAACATGTTC 15307353
Query 106460 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 106519
|| || ||||| || |||||||| ||||| ||||||| ||| |||||| | ||||
Sbjct 15307352 AGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATCAGGTGCTGAGTACTCGACAATT 15307293
Query 106520 TCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTG 106579
|||||||| || || | ||||| || || | ||| | ||| || |||||| | |||
Sbjct 15307292 TCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTATTG 15307233
Query 106580 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCC 106618
|| | |||||| | |||||||| || | || || |||
Sbjct 15307232 CAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCC 15307194
>seq4
Length=20862834
Score = 91.5 bits (100), Expect = 2e-13
Identities = 118/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 117270 CACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAG 117329
||| ||||| || ||| ||||| || || ||||| || || || || |||||| ||
Sbjct 15862738 CACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAG 15862797
Query 117330 GCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAA 117389
|| ||||||||||| |||||||||| |||| | || | | || ||| |||||
Sbjct 15862798 ACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTAAAGAA 15862857
Query 117390 GATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432
||| || ||||| |||||| |||| || |||||||| |||
Sbjct 15862858 GATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAG 15862900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589980755751440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |