Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5 123 3e-23 seq4 91.5 2e-13 >seq5 Length=28826359 Score = 123 bits (136), Expect = 3e-23 Identities = 451/699 (65%), Gaps = 13/699 (2%) Strand=Plus/Minus Query 105925 TCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTG 105984 || |||| ||| || || || || || ||||| || |||| |||||||||| ||||| Sbjct 15307884 TCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGATTCGTTATTACCCATAATTTG 15307825 Query 105985 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTT 106044 ||| || || ||||| ||||| || || | || | || | || || | | || Sbjct 15307824 TGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAATTCCTAATTCCGTGCTTTTT 15307765 Query 106045 GATGCGTTCCTTGAGAACATCCCAGTCG--TAGTTGAGCTTG-GTTTCACCTTCCCACAT 106101 ||| ||| || || | ||| || ||| | | | | |||| | |||||||| Sbjct 15307764 AATGTCTTCTTTCAGGCTTTGCCAATCCCATAGGTTCGTTGGAGTTTTA---TCCCACAT 15307708 Query 106102 ATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTG 106161 |||| |||| || | |||| | ||| || ||| | || ||||| | ||| Sbjct 15307707 ATCATATTGTAGAATTCCTTTGCTTACAGGACTTCCTTCATAGGTTTCATATGGACCAAA 15307648 Query 106162 GGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACG 106221 |||| ||| | |||||| || || || || | | | ||| || |||||||| || | Sbjct 15307647 TGCTTGAGCAAGTTCACAACTAGCTTCTAGAGCTCCAAAATAAATTGTTTCAAATATTTG 15307588 Query 106222 AGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATC 106281 || | |||||| || ||| | | | || ||||| || | || Sbjct 15307587 TTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAACGCATTAAAATTAAAGCGTC 15307528 Query 106282 CGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGT 106341 || |||||||||| ||| | ||| || || | || | | ||| ||||| || | Sbjct 15307527 AGCTAGACCTTGAATACCTATACCGATTGGACGATGCCTTAAATTGGACTTCTTGGCT-T 15307469 Query 106342 CT--CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 106399 || ||| ||| ||| | || |||| || | | ||| |||||||||| |||| | || Sbjct 15307468 CTGGCAAAGGG-TAATAGTTGATGTCTATAATTTTGTTAAGATTTTTGGCAACAGTTTTG 15307410 Query 106400 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA 106459 || | ||| | | ||||| ||||| | || | ||| | | || || | Sbjct 15307409 GTTACTTCTTTTAATTTTTTGAAATCATACGTTT---TTTCTGCTGTTACGAACATGTTC 15307353 Query 106460 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 106519 || || ||||| || |||||||| ||||| ||||||| ||| |||||| | |||| Sbjct 15307352 AGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATCAGGTGCTGAGTACTCGACAATT 15307293 Query 106520 TCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTG 106579 |||||||| || || | ||||| || || | ||| | ||| || |||||| | ||| Sbjct 15307292 TCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTATTG 15307233 Query 106580 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCC 106618 || | |||||| | |||||||| || | || || ||| Sbjct 15307232 CAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCC 15307194 >seq4 Length=20862834 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 117270 CACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAG 117329 ||| ||||| || ||| ||||| || || ||||| || || || || |||||| || Sbjct 15862738 CACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAG 15862797 Query 117330 GCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAA 117389 || ||||||||||| |||||||||| |||| | || | | || ||| ||||| Sbjct 15862798 ACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTAAAGAA 15862857 Query 117390 GATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 ||| || ||||| |||||| |||| || |||||||| ||| Sbjct 15862858 GATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAG 15862900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980755751440