Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq5 141 2e-28
seq2 141 2e-28
seq1 136 9e-27
>seq5
Length=28826359
Score = 141 bits (156), Expect = 2e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || || ||||| || || || ||||| |||| ||||| | ||||| || |||||
Sbjct 28457476 GTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTG 28457535
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| |||||||| || || || || ||||| |||||||| || ||||| || || ||
Sbjct 28457536 CTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTT 28457595
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| ||||| |||||||| || || || || | ||| | ||||| || ||
Sbjct 28457596 AGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCAGT 28457655
Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142
| |||||| ||||| | ||||||||
Sbjct 28457656 GAGAGTTTTCACGAAGATTTGCATTT 28457681
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003
|||||||| || ||||| || ||||| | || |||| |||||||| | ||||| ||
Sbjct 15755921 GTGGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCCAATTGCTTGCCA 15755980
Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063
|||||||| | || ||||| ||||||||||| ||||||||||| || || || |||
Sbjct 15755981 GCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTG 15756040
Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123
|| || || ||||| |||||| ||| || ||||| || | ||||| || || | ||
Sbjct 15756041 ACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTTATGGTCTTGCCCGTTAGGGTC 15756100
Query 195124 TTTACGAACACTTGCAT 195140
||||| || | |||||
Sbjct 15756101 TTTACAAAGATCTGCAT 15756117
>seq2
Length=30136903
Score = 141 bits (156), Expect = 2e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| ||||| ||||| || || || ||||| || | |||||| | ||||| || ||||||
Sbjct 19092348 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGC 19092407
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || |||||||| || || || |||||||| || || || || ||||| || || ||
Sbjct 19092408 TTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTG 19092467
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| ||||||||||||||||| || ||||| || ||||| | || ||||| |||
Sbjct 19092468 GCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCGGTC 19092527
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
| ||| || ||||| | |||||
Sbjct 19092528 AGAGTCTTCACGAATATCTGCAT 19092550
Score = 140 bits (154), Expect = 7e-28
Identities = 154/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| ||||| ||||| || || || ||||| || | |||||| | ||||| || ||||||
Sbjct 19092576 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGC 19092635
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || |||||||| || || || ||||| || || || || || ||||| || || ||
Sbjct 19092636 TTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTG 19092695
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| ||||||||||||||||| || ||||| || ||||| | || ||||| |||
Sbjct 19092696 GCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCAGTC 19092755
Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142
|| ||||| || || | |||||||
Sbjct 19092756 AAGGTTTTCACAAAGATCTGCATTT 19092780
>seq1
Length=22123056
Score = 136 bits (150), Expect = 9e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987
||| || | ||| | ||||||||| || || || ||||| |||| | ||| | || ||
Sbjct 6630567 CAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTC 6630508
Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047
|| |||||||| || |||||||| | || || || ||||| |||||||| || |||||
Sbjct 6630507 CTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC 6630448
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107
|| || || |||||| ||||| ||||||||||| || || || ||||| | ||
Sbjct 6630447 CTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATGGT 6630388
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
||| || |||| ||||| ||||| | |||||||
Sbjct 6630387 CTTGCCAGTCAGGGTTTTCACGAAAATCTGCATTT 6630353
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109481514708602
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |