Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2 107 1e-18 seq5 105 4e-18 seq1 95.1 8e-15 >seq2 Length=30136903 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||||||| | || |||| |||||||| || || || || Sbjct 19092360 TCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAG 19092419 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | ||||||||||| ||||| || ||| Sbjct 19092420 ATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 19092479 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || || | ||| ||||||||||| || ||||||||||| Sbjct 19092480 TCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCGGTCAGAGTCTTCACG 19092539 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 19092540 AATATCTGCATA 19092551 Score = 102 bits (112), Expect = 5e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||||||| | || |||| |||||||| || ||||| || Sbjct 19092588 TCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAG 19092647 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| || ||| Sbjct 19092648 ATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 19092707 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || || | ||| ||||||||||| || | || |||||| Sbjct 19092708 TCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACA 19092767 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 19092768 AAGATCTGCATTTT 19092781 >seq5 Length=28826359 Score = 105 bits (116), Expect = 4e-18 Identities = 154/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || || | || |||| ||| Sbjct 28457471 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 28457530 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || ||||| ||| | || | ||||||||||| Sbjct 28457531 AGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 28457590 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | ||| || ||| || || | ||| ||||| | Sbjct 28457591 ATCTTAGCCTTGAC--ATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCT 28457648 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCG 34986 | || |||||||| ||||| ||||| ||||| |||| Sbjct 28457649 TGCCAGTGAGAGTTTTCACGAAGATTTGCATTTTCG 28457684 >seq1 Length=22123056 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||| | ||| || ||||| ||||| ||||| || | | ||| | || Sbjct 6630567 CAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTC 6630508 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||||||| || ||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 6630507 CTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC 6630448 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||||| ||||| || || || | || || |||||| |||| ||| ||| Sbjct 6630447 CTGGATCTTAGCCTTGAC--ATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATG 6630390 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || || || || || ||||| || |||||||| || Sbjct 6630389 GTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCATTTT 6630352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633576261168