Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq2 107 1e-18
seq5 105 4e-18
seq1 95.1 8e-15
>seq2
Length=30136903
Score = 107 bits (118), Expect = 1e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||||||||| | || |||| |||||||| || || || ||
Sbjct 19092360 TCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAG 19092419
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||||||| | || | ||||||||||| ||||| || |||
Sbjct 19092420 ATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 19092479
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | ||| || || | ||| ||||||||||| || |||||||||||
Sbjct 19092480 TCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCGGTCAGAGTCTTCACG 19092539
Query 34971 AAGATCTGCATA 34982
|| |||||||||
Sbjct 19092540 AATATCTGCATA 19092551
Score = 102 bits (112), Expect = 5e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||||||||| | || |||| |||||||| || ||||| ||
Sbjct 19092588 TCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAG 19092647
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| | || | ||||||||||| ||||| || |||
Sbjct 19092648 ATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 19092707
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | ||| || || | ||| ||||||||||| || | || ||||||
Sbjct 19092708 TCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACA 19092767
Query 34971 AAGATCTGCATATT 34984
||||||||||| ||
Sbjct 19092768 AAGATCTGCATTTT 19092781
>seq5
Length=28826359
Score = 105 bits (116), Expect = 4e-18
Identities = 154/216 (71%), Gaps = 4/216 (2%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | || || ||||| ||||| ||||| || || | || |||| |||
Sbjct 28457471 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 28457530
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || ||||| || || || || ||||| ||| | || | |||||||||||
Sbjct 28457531 AGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 28457590
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
||||| ||||| || || || | ||| || ||| || || | ||| ||||| |
Sbjct 28457591 ATCTTAGCCTTGAC--ATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCT 28457648
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCG 34986
| || |||||||| ||||| ||||| ||||| ||||
Sbjct 28457649 TGCCAGTGAGAGTTTTCACGAAGATTTGCATTTTCG 28457684
>seq1
Length=22123056
Score = 95.1 bits (104), Expect = 8e-15
Identities = 153/218 (70%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| |||||||| | ||| || ||||| ||||| ||||| || | | ||| | ||
Sbjct 6630567 CAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTC 6630508
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|||||||| || ||||| || || | || ||||| ||| | || | |||||||||||
Sbjct 6630507 CTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC 6630448
Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946
||||| ||||| || || || | || || |||||| |||| ||| |||
Sbjct 6630447 CTGGATCTTAGCCTTGAC--ATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATG 6630390
Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| || || || || || ||||| || |||||||| ||
Sbjct 6630389 GTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCATTTT 6630352
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633576261168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |