Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 425 6e-114 >seq5 Length=28826359 Score = 425 bits (470), Expect = 6e-114 Identities = 1218/1878 (65%), Gaps = 23/1878 (1%) Strand=Plus/Minus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || || |||||||| | |||| || || | |||||| |||||||| ||||| || Sbjct 15308261 TTGTCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCCG 15308202 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 || |||| || |||| | ||||| || || ||||| || | || Sbjct 15308201 GTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGGC 15308142 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 |||| | |||| ||||| || ||||| |||||||||||||||||||||||||| ||| Sbjct 15308141 TCTGCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCC 15308082 Query 47154 ATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCT 47213 || | | | || || || |||||||| |||||||||| | || || Sbjct 15308081 ATTTTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCGAAC--CT 15308024 Query 47214 TCTGGG----AGATT-AGTATTTTGAATAGATCCTCCgttttctataattttgtttttta 47268 | |||| || || | ||| |||||| || || | | | || ||||| ||||| | Sbjct 15308023 TTTGGGGAATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAAATTATTTTATTTTTCA 15307964 Query 47269 attcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTT 47328 |||| ||| | | || ||||| | || | |||| |||| || | || Sbjct 15307963 TCTCATCATCCCATAAGTCCAACTCTGTTAAATCCCTCAATAAATGATGATTGACCACTT 15307904 Query 47329 GAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATT 47388 ||||||| ||||||| ||||| | |||| ||||| | ||||||||||| | |||| Sbjct 15307903 GAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGATT 15307844 Query 47389 CATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTAT 47448 | ||||| || | |||||| ||||| |||||||||||||| | || ||||| || || Sbjct 15307843 CGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAAT 15307784 Query 47449 TTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATG 47508 | || | ||| | |||| || | || ||||||||| || | | || Sbjct 15307783 TCCTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGCCAATCCCATAGGTTCGTTG 15307724 Query 47509 GAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATG 47568 || || ||| | ||||||||| ||||||||||| |||| ||| || | ||| | Sbjct 15307723 GAGTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGACTTCCTTCATAGG 15307664 Query 47569 TTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATA 47628 ||| ||| ||||| || || ||| ||||||||||| ||||| | || | | |||| | Sbjct 15307663 TTTCATATGGACCAAATGCTTGAGCAAGTTCACAACTAGCTTCTAGAGCTCCAAAATAAA 15307604 Query 47629 TTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNN 47688 ||||||||||||||| | ||||| | | |||||| |||| | ||| | Sbjct 15307603 TTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAACGCA 15307544 Query 47689 NNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTAT 47748 || | || || | ||||||| ||| ||||| ||||| | ||| || || Sbjct 15307543 TTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCCTTAAAT 15307484 Query 47749 TAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNN 47808 | || || |||||||| || || || | ||| || ||||||||||| || ||| Sbjct 15307483 TGGACTTCTTGGCTTCTGGCAAAGGGTAATAGTTGATGTCTATAATTTTGTTAAGATTTT 15307424 Query 47809 NNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTAT---TTATAA 47865 | |||| ||||||| || |||||| || | || | | | | Sbjct 15307423 TGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTTCTGCTGTTA 15307364 Query 47866 CAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTAT 47925 | ||| | || |||||||| || |||| ||| || ||||| | ||||| || | | Sbjct 15307363 CGAACATGTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATCAGGTGCTGAGT 15307304 Query 47926 ATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTAT 47985 | | | ||||| | ||||| ||||| ||||| ||||| || | |||||| ||||| Sbjct 15307303 ACTCGACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGC 15307244 Query 47986 TNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATT 48045 | | || || | ||||| ||||||| | || | |||||||| | || |||| Sbjct 15307243 TCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCACTTGCGATT 15307184 Query 48046 CAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTC---TAGCTTTATTATCAT 48102 | || || | ||| | || ||| | ||| || | || | || || | Sbjct 15307183 CTATAATGGCAAACCATAAAG-CCTGGGCTT--CCACTGTTCGATTCGCACGTCCTTCTT 15307127 Query 48103 GTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGAC 48162 | || ||||| ||| | | ||||||| || || | |||| | | ||||||| Sbjct 15307126 GCTCATATTTGACATAGAGTTCTTCAAATTTTTCGCCCCAAACATCTTGAAGGCCAGGAC 15307067 Query 48163 ATTCATTAGGACACATCAATGACCAATCCTCATCATTT---TTTACTCTAGTCATAAATA 48219 ||| || ||||||||||||||||| || |||||| | || | |||| || | Sbjct 15307066 ATTTATGTGGACACATCAATGACCA--GCT-TTCATTTGCCTCAACACGTTTCATGAAAA 15307010 Query 48220 TATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTAT 48279 ||| || ||||| | ||| ||| | ||| | | || |||||| || ||| | | Sbjct 15307009 GATCAGGAATCCATAAAGCGTAAAAAAGATCACGTGCTCGGTTTTCTTCTTTTCCAGTGT 15306950 Query 48280 TCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCA 48339 | ||||| || || | ||| || | | ||| | |||||| || |||||||| || || | Sbjct 15306949 TTCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAA 15306890 Query 48340 TTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTC 48399 |||| |||| ||| |||||| ||||| | ||||| || ||| ||| |||||| Sbjct 15306889 AGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGAGCCACATTATTAAAAACTC 15306830 Query 48400 TTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAG 48459 |||||||||| || | ||||| || |||| || ||||| | || || | || ||| Sbjct 15306829 TTAACATTGGAACTAATCCATTCGACGTACCGTTCGTTCCACATATTGAAGTGCCTTTAG 15306770 Query 48460 CTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACC 48519 | | || | || | | || || |||||||| ||| || || || ||||| Sbjct 15306769 CACGAATGCAATGAACATTAGT-CCGATTCCACCTGCTGATTTGGAAATCAGTGCACATT 15306711 Query 48520 GTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAAC 48579 ||| || | | | |||| ||||| || ||| |||| | || |||||||| Sbjct 15306710 GTTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCATTGTCAAAAGAAAACACG 15306651 Query 48580 TAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACC 48639 |||| ||| || || || | | | ||| | ||||| || ||||| |||| Sbjct 15306650 AGGACAATTGAGGTCGATTTGTAGCAGCAGCAAAAAGCGTTGGCGAGGCATGCGTAAAGT 15306591 Query 48640 ATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATAC 48699 || || || | | || || ||||| | | | ||| ||||| | ||| |||| Sbjct 15306590 ATCGTTCAGACAGTAGGTTGTAAGTTTCCACTGCCGCATCAATATCGTCTCCATGAATAC 15306531 Query 48700 CTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCA 48759 | | || || ||||| | ||| | ||| || | ||| ||||||| |||||| || | Sbjct 15306530 CAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCTGCAATTTTCCCATTTATCTTAA 15306471 Query 48760 AAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 ||||| || || | || ||||| ||||||||||| || ||| || |||| Sbjct 15306470 GTAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCAAAATCTCGGTCAT 15306411 Query 48820 TAATAATTGATGAATTTA 48837 |||||| | || |||| Sbjct 15306410 AAATAATAGCAGAGTTTA 15306393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108757841840