Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq5 154 1e-32
seq1 93.3 3e-14
seq4 91.5 1e-13
seq2 89.7 4e-13
>seq5
Length=28826359
Score = 154 bits (170), Expect = 1e-32
Identities = 162/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|||||||| | ||| || || || || || || ||||| | | |||| | |||| |||
Sbjct 15755909 ACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCC 15755968
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|||||||| || || || ||||||||||||||||| || ||||| |||||||| || ||
Sbjct 15755969 AATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGG 15756028
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || ||| ||| |||| | || || || | ||| || |||||||| | || |||
Sbjct 15756029 ATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTTATGGTCTTG 15756088
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473
|| |||| || |||||||| ||||||||||||
Sbjct 15756089 CCCGTTAGGGTCTTTACAAAGATCTGCATGGTT 15756121
>seq1
Length=22123056
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| || || || || | || || || || || || ||||| |||| | ||| | |
Sbjct 6630570 ACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCC 6630511
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
|| |||| ||||| || || || ||||||||||| ||||| || |||||||| || ||
Sbjct 6630510 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTT 6630451
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|| || || || || ||| | || | ||||| || | || || || || ||||
Sbjct 6630450 GTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGAT 6630391
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| ||||| || | ||||| || || ||||||||
Sbjct 6630390 GGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 6630355
>seq4
Length=20862834
Score = 91.5 bits (100), Expect = 1e-13
Identities = 170/248 (69%), Gaps = 4/248 (2%)
Strand=Plus/Plus
Query 13654 GAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGCTC 13713
||| || || || || |||| | | ||||||| || || || || | || | ||||||
Sbjct 9425561 GAACTTGCGCTTGCATCCTTGATAGTTCATGTAGCGAATCTTTCCGAATATCGCTCGCTC 9425620
Query 13714 CATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTGGG 13773
| ||||| | |||||| | || | || ||||||||||| || |||| || |||||
Sbjct 9425621 CTTCCAGCCCATATCGTGTATGCCCCCAATGGACCACATGCAGCCCACATAGCCATTGGG 9425680
Query 13774 ATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCACTG- 13832
|||||| || || | ||||| |||||||| | || |||| | | ||| |||
Sbjct 9425681 ATCGCGCCCGTCTAGGCTGTACTTGTCGTTCAGCAGGATCGCGT--ACTCCAGCGCCTGC 9425738
Query 13833 -TAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGC 13891
|||| | ||| || | |||||| || ||||| || || | | | ||||||||
Sbjct 9425739 TCCGGCGTGGCCGTCCACTCGAGTATTTTCTTGGCCCAGTACATGCGAAGAAATCCGTGC 9425798
Query 13892 ATTTTGCC 13899
|| |||||
Sbjct 9425799 ATCTTGCC 9425806
>seq2
Length=30136903
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| || || || || || || || ||||| || | | ||| | | |||| |||
Sbjct 19092342 ACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCC 19092401
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || || || || | |||||| || || || || || || || || || ||
Sbjct 19092402 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 19092461
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || || | || | ||||| || | ||||| || || |||| |||||
Sbjct 19092462 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTT 19092521
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | ||| || || |||||||||||
Sbjct 19092522 CCGGTCAGAGTCTTCACGAATATCTGCAT 19092550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396278371022142
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |