Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4 230 4e-55 >seq4 Length=20862834 Score = 230 bits (254), Expect = 4e-55 Identities = 559/830 (67%), Gaps = 25/830 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || |||| | |||||||||||||||||||| || |||| |||||| |||| Sbjct 15862450 CTGGTACTCGGCCACCTTCTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTC 15862509 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 |||||| ||| || || ||||| || | | || || | || | ||||| Sbjct 15862510 CATGAAATTGAAAGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAG 15862569 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 |||| || ||| |||||||||| | |||||||| ||||||||| || | Sbjct 15862570 CCGATCGGCCACGAACTCGATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATT 15862629 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||||||| || | ||||| ||||||| ||| || | ||| || |||| | |||| Sbjct 15862630 GACGGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCTC 15862689 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGC-AGGTGCTTGG-CATAGAGCATGCAGGCA 48136 | | ||| | ||| | ||| | || || | ||| ||||| ||| Sbjct 15862690 GATGATGCGCTCCCGCTTGGGCC-GCTGCACTAGATGGTGATACAT-GAGCACC---GCA 15862744 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | |||||||| ||| ||| ||| ||||||||||| ||||| ||| Sbjct 15862745 AAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGC 15862804 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || || ||||| || || | || || ||| |||||||| || Sbjct 15862805 ATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTAAAGAAGATTCCT 15862864 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG--CGTTCTTGTCTGAGATCC 48314 ||||| ||||| || || | | | ||| | |||| | || | | | || |||| Sbjct 15862865 TCCACGGCCGCAAAGGCAATAATACGCTCGGC-AAAGTTGGCCGATTTCGAG-GATATCC 15862922 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 |||| | |||||||| ||||| ||| | ||||| ||||| || || ||| | Sbjct 15862923 AGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAACA 15862982 Query 48375 GCTTCTTGCACTCACCTGCG--TCCGCAACATAGGT---AGTGAGCA-GCTTTGCGTACA 48428 | | || ||| ||||| ||| | ||||| | |||||| ||| ||||| Sbjct 15862983 AGTAGTCGCGCTC--CTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCT----GTACA 15863036 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| |||||||||||||| || || |||||||| ||||||||| | ||||| | Sbjct 15863037 TCTCGGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCCGTGA 15863096 Query 48489 CCTGCACTTC-TGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 |||||| || || | || | ||| | ||||||||| || || || || || || ||| Sbjct 15863097 TCTGCACCTCCTGACTA-AAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCA 15863155 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAG 48607 || |||||||| || ||||| | || | ||||||||||| |||||| |||| Sbjct 15863156 GCGAAGAAGGCTAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAG 15863215 Query 48608 CCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 || |||| || || ||||| |||||||| ||||||||||| || Sbjct 15863216 TCCGTCGCGTCCTTCGATAGATCCACCTCTTCCACGGTCCAGAAGGAGGC 15863265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532730135040