Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4 163 5e-35 >seq4 Length=20862834 Score = 163 bits (180), Expect = 5e-35 Identities = 525/814 (64%), Gaps = 11/814 (1%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGG-CTGGTACGCTCTATCCA 25570 |||||||| |||||| | ||||| | |||||| | |||| |||| | ||| | Sbjct 15863257 CTGGACCGTGGAAGAGGTGGATCTATCGAAGGACGCG-ACGGACTGGGCCCGTCTCACTG 15863199 Query 25571 AAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAG 25630 | |||||| | ||| || | ||| | || ||||| || ||||| || || || | Sbjct 15863198 ACAACGAGCGCTACTTTATCTCCCATGTGCTAGCCTTCTTCGCTGCCTCGGACGGCATTG 15863139 Query 25631 TGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTT 25690 | |||||||||||| |||| | || | ||| |||||| | |||||| || | Sbjct 15863138 TTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGATCACGGAGGCACGTTGCT 15863079 Query 25691 TCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGA 25750 ||||||| |||||||| ||||| || ||||||||||| ||| |||| | ||| | Sbjct 15863078 TCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGATGTACAGCGTGCTCATTG 15863019 Query 25751 TGACGTACATTACAGACGTCGC-CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809 || |||| ||| | | ||| ||| | || |||| ||| || ||| ||| Sbjct 15863018 ACACCTACA-TACGGGAGCCGCAGGAGCGCGACTACTTGTTCAATGCTATTGAGACCATG 15862960 Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC-GCTAC 25868 || | ||| | |||||| ||||||||| ||||| | | | | | | || | Sbjct 15862959 CCGGCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCTGGAT-ATCCTCGAAATCGGCCAA 15862901 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 |||| |||||| | | |||||||| || ||||| || ||||| || ||||| || Sbjct 15862900 CTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGCGGCAGCTT 15862841 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 ||| | ||||| ||||| ||| || || ||||||||| ||| ||| |||||||| Sbjct 15862840 TGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGA 15862781 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTA-CACGGGCC 26047 ||| ||| | | ||||| ||||| ||| | || ||||| || | || || || Sbjct 15862780 GCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGGTGCTCATGTATCA----CC 15862725 Query 26048 ACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGA 26107 | | | || || | ||| | || | ||||||| || |||||||| | Sbjct 15862724 ATCTAGTGCAGCGGCCCAAGCGGGAGCGCATCATCGAGATCATCAGGGATGCTGTGGAAA 15862665 Query 26108 TCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC 26167 ||||| ||||||| | | ||||||||| | Sbjct 15862664 TCGAGCAGGAGTTCCTCACTGAAGCCCTGCCCGTCAATTTGATTGGCATGAACTGTGTTC 15862605 Query 26168 TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCA 26227 ||||| ||| ||||| |||| |||||||| | ||||| | |||| || | | | Sbjct 15862604 TCATGTCCCAGTACATCGAGTTCGTGGCCGATCGGCTGCTAGGGGAGCTCGGTGTGGGTA 15862545 Query 26228 GACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGA 26287 |||||| || || || ||| | || ||||| | || ||| |||| || |||| Sbjct 15862544 AGATCTACAACACTAAGAATCCTTTCAATTTCATGGAGATGATCTCGCTGGACGGAAAGA 15862485 Query 26288 CCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 | ||||||||||| |||| ||| | ||| || || Sbjct 15862484 CAAACTTCTTTGAGAAGAAGGTGGCCGAGTACCA 15862451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844730336640