Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq3 194 1e-43
seq5 109 4e-18
seq4 91.5 1e-12
>seq3
Length=33007066
Score = 194 bits (214), Expect = 1e-43
Identities = 377/548 (69%), Gaps = 8/548 (1%)
Strand=Plus/Minus
Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392
||||||||||||| || || || ||| |||||| | ||| | || |||| || || |
Sbjct 2876177 TTGGTATTGATTTGGGCACAACCTACTCTTGTGTGGGTGTGTTCCAGCATGGCAAGGTCG 2876118
Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452
| || |||||||| ||||| |||||| | || |||||||| |||||| | || || || |
Sbjct 2876117 AGATCATTGCCAACGACCAGGGTAATCGTACGACACCATCCTATGTTGCCTTCACGGACA 2876058
Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512
| || | | | ||||| ||||| || || |||| | || || || | || |
Sbjct 2876057 CGGAGCGTTTGATTGGTGATGCCGCCAAGAATCAGGTGGCGATGAACCCAACCCAAACGA 2875998
Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572
| || ||||| || | |||||||||| || ||||| ||| | |||| || ||||| |
Sbjct 2875997 TCTTCGATGCCAAGCGTCTGATTGGTCGCAAGTTTGAGGATTCTGCTGTGCAGTCTGACA 2875938
Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630
|| || ||||| || | ||| | | ||| | ||| || || | || || | | |
Sbjct 2875937 TGAAGCACTGGCCCTTCGATGTGGTCAGTGTAGATGGCAAGCCCAAGATTGAGGTTACGT 2875878
Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690
||| | | | | || | || | ||| || || | || || || ||||| || ||||
Sbjct 2875877 ACAAGGATGAG-AAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCCATGGTGTTGACCAA 2875820
Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748
|||||| | |||| |||| | || | ||| ||||| ||| | |||| || || |||
Sbjct 2875819 AATGAAGGAGACCGCCGAG-GCGTA-CCTGGGCAAGACAGTGTCGAATGCCGTCATCACT 2875762
Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808
|| ||||| || || || || ||||| ||||| || || || ||||| || | |||||
Sbjct 2875761 GTGCCAGCCTACTTCAACGACTCTCAGCGTCAGGCGACCAAGGATGCCGGTACCATTGCC 2875702
Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868
|| | ||||| | ||||| || || || || || || || || | || ||||| ||
Sbjct 2875701 GGATTGAATGTGCTGCGTATCATCAACGAGCCCACGGCCGCTGCTATCGCCTATGGCCTG 2875642
Query 474869 GATAAGAA 474876
|| |||||
Sbjct 2875641 GACAAGAA 2875634
Score = 152 bits (168), Expect = 3e-31
Identities = 370/553 (67%), Gaps = 8/553 (1%)
Strand=Plus/Plus
Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387
||| |||||||||||||| || || ||| || | ||||| | ||| | || ||||| ||
Sbjct 3145459 TGCTATTGGTATTGATTTGGGCACAACTCACTGCTGTGTGGGTGTGTTCCAGAATGGCAA 3145518
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
|| || || |||||||| ||||| |||||| | || ||| |||| |||||| | || ||
Sbjct 3145519 GGTCGAGATCATTGCCAACGACCATGGTAATCGTACCACATCATCCTATGTTGCCTTCAC 3145578
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507
|| || || | | ||||| ||||| || || | || | || | || |
Sbjct 3145579 GGACACGGAGCGCTTAATTGGTGATGCCGCCAAGAACCAGGTGGCGGTACACCCACACCA 3145638
Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567
| || || ||| | || | |||||||||| || ||| | ||| | |||| || ||
Sbjct 3145639 CAGGATCTTCGATTCGAAGCGTCTGATTGGTCGCAAGTTTAAGGATTCTGCTGTGCAGTC 3145698
Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627
||| ||| || ||||| || | ||| | | ||| | || || || | || || |
Sbjct 3145699 TGACATGAAGCACTGGCCCTTCGATGTGGTCAGTGTAGACGGCAAGCCTAAGATTGAGGT 3145758
Query 474628 AA--TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685
| |||| | | | |||| | || | ||| || || | || ||| | ||||| ||
Sbjct 3145759 TACGTACAAGGACGAGAAA-AAGACCTTCTTCGCC-GAGGAGATCTCTGCCATGGTGTTG 3145816
Query 474686 GCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAA 474743
|||||||||| | |||| |||| | | ||| ||||| || || |||| || |
Sbjct 3145817 ACCAAAATGAAGGAGACCGCCGAG--GAGTACCTGGGCAAGACGGTGACCAATGCTGTCA 3145874
Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803
| |||| ||||| | || || || || || ||||| || || || ||||| || | |
Sbjct 3145875 TCTCTGTGCCAGCCCACTTCAACGACTCGCAGCGTCAGGCTACCAAGGATGCCGGTACCA 3145934
Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863
| || ||| | ||||| | ||||| || || || || || || || || | || ||||
Sbjct 3145935 TCGCCGGTTTGAATGTGCTGCGTATCATCAACGAGCCCACGGCCGCTGCTATCGCCTATG 3145994
Query 474864 GTCTTGATAAGAA 474876
| || || |||||
Sbjct 3145995 GCCTGGACAAGAA 3146007
>seq5
Length=28826359
Score = 109 bits (120), Expect = 4e-18
Identities = 159/221 (72%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAA--GTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608
|||||| || ||||| | ||| | ||| ||| ||| ||| |||||||||| ||
Sbjct 15755896 ACGAAGCCGAAGTACTAAATGCAAGGTGGACTC-CTTCTGAATG-TTATAATCAGACAGT 15755953
Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668
|||| | |||||| | |||||| ||||| || || | ||| |||||||| |||||||||
Sbjct 15755954 GTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATT 15756013
Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728
||||| ||||| || ||||| ||||||| ||| || ||||| | || |||
Sbjct 15756014 CCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGACCTCA 15756073
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || || || || ||||| || || || ||
Sbjct 15756074 AGAGTTATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTG 15756114
>seq4
Length=20862834
Score = 91.5 bits (100), Expect = 1e-12
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805
||||| || || || || ||||| || || ||||| || || || ||||| ||| |||
Sbjct 13912527 ACTGTGCCCGCCTACTTCAATGACTCGCAGCGTCAGGCCACCAAGGATGCCGGACAGATT 13912468
Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865
|| |||||||||||||| ||| | || || || || |||||||| || || || || ||
Sbjct 13912467 GCCGGTCTTAATGTTTTGCGTGTGATCAACGAGCCCACAGCAGCGGCCCTGGCCTACGGC 13912408
Query 474866 CTTGATAAGA 474875
| |||||||
Sbjct 13912407 ATGGATAAGA 13912398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268178942630888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |