Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3 194 1e-43 seq5 109 4e-18 seq4 91.5 1e-12 >seq3 Length=33007066 Score = 194 bits (214), Expect = 1e-43 Identities = 377/548 (69%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| |||||| | ||| | || |||| || || | Sbjct 2876177 TTGGTATTGATTTGGGCACAACCTACTCTTGTGTGGGTGTGTTCCAGCATGGCAAGGTCG 2876118 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || |||||||| ||||| |||||| | || |||||||| |||||| | || || || | Sbjct 2876117 AGATCATTGCCAACGACCAGGGTAATCGTACGACACCATCCTATGTTGCCTTCACGGACA 2876058 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | | | ||||| ||||| || || |||| | || || || | || | Sbjct 2876057 CGGAGCGTTTGATTGGTGATGCCGCCAAGAATCAGGTGGCGATGAACCCAACCCAAACGA 2875998 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || ||||| || | |||||||||| || ||||| ||| | |||| || ||||| | Sbjct 2875997 TCTTCGATGCCAAGCGTCTGATTGGTCGCAAGTTTGAGGATTCTGCTGTGCAGTCTGACA 2875938 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || ||||| || | ||| | | ||| | ||| || || | || || | | | Sbjct 2875937 TGAAGCACTGGCCCTTCGATGTGGTCAGTGTAGATGGCAAGCCCAAGATTGAGGTTACGT 2875878 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| || |||| Sbjct 2875877 ACAAGGATGAG-AAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCCATGGTGTTGACCAA 2875820 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 |||||| | |||| |||| | || | ||| ||||| ||| | |||| || || ||| Sbjct 2875819 AATGAAGGAGACCGCCGAG-GCGTA-CCTGGGCAAGACAGTGTCGAATGCCGTCATCACT 2875762 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || ||||| || || || || ||||| ||||| || || || ||||| || | ||||| Sbjct 2875761 GTGCCAGCCTACTTCAACGACTCTCAGCGTCAGGCGACCAAGGATGCCGGTACCATTGCC 2875702 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || | ||||| | ||||| || || || || || || || || | || ||||| || Sbjct 2875701 GGATTGAATGTGCTGCGTATCATCAACGAGCCCACGGCCGCTGCTATCGCCTATGGCCTG 2875642 Query 474869 GATAAGAA 474876 || ||||| Sbjct 2875641 GACAAGAA 2875634 Score = 152 bits (168), Expect = 3e-31 Identities = 370/553 (67%), Gaps = 8/553 (1%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| |||||||||||||| || || ||| || | ||||| | ||| | || ||||| || Sbjct 3145459 TGCTATTGGTATTGATTTGGGCACAACTCACTGCTGTGTGGGTGTGTTCCAGAATGGCAA 3145518 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || || || |||||||| ||||| |||||| | || ||| |||| |||||| | || || Sbjct 3145519 GGTCGAGATCATTGCCAACGACCATGGTAATCGTACCACATCATCCTATGTTGCCTTCAC 3145578 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || || || | | ||||| ||||| || || | || | || | || | Sbjct 3145579 GGACACGGAGCGCTTAATTGGTGATGCCGCCAAGAACCAGGTGGCGGTACACCCACACCA 3145638 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 | || || ||| | || | |||||||||| || ||| | ||| | |||| || || Sbjct 3145639 CAGGATCTTCGATTCGAAGCGTCTGATTGGTCGCAAGTTTAAGGATTCTGCTGTGCAGTC 3145698 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 ||| ||| || ||||| || | ||| | | ||| | || || || | || || | Sbjct 3145699 TGACATGAAGCACTGGCCCTTCGATGTGGTCAGTGTAGACGGCAAGCCTAAGATTGAGGT 3145758 Query 474628 AA--TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | |||| | | | |||| | || | ||| || || | || ||| | ||||| || Sbjct 3145759 TACGTACAAGGACGAGAAA-AAGACCTTCTTCGCC-GAGGAGATCTCTGCCATGGTGTTG 3145816 Query 474686 GCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAA 474743 |||||||||| | |||| |||| | | ||| ||||| || || |||| || | Sbjct 3145817 ACCAAAATGAAGGAGACCGCCGAG--GAGTACCTGGGCAAGACGGTGACCAATGCTGTCA 3145874 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 | |||| ||||| | || || || || || ||||| || || || ||||| || | | Sbjct 3145875 TCTCTGTGCCAGCCCACTTCAACGACTCGCAGCGTCAGGCTACCAAGGATGCCGGTACCA 3145934 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 | || ||| | ||||| | ||||| || || || || || || || || | || |||| Sbjct 3145935 TCGCCGGTTTGAATGTGCTGCGTATCATCAACGAGCCCACGGCCGCTGCTATCGCCTATG 3145994 Query 474864 GTCTTGATAAGAA 474876 | || || ||||| Sbjct 3145995 GCCTGGACAAGAA 3146007 >seq5 Length=28826359 Score = 109 bits (120), Expect = 4e-18 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAA--GTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||| || ||||| | ||| | ||| ||| ||| ||| |||||||||| || Sbjct 15755896 ACGAAGCCGAAGTACTAAATGCAAGGTGGACTC-CTTCTGAATG-TTATAATCAGACAGT 15755953 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 |||| | |||||| | |||||| ||||| || || | ||| |||||||| ||||||||| Sbjct 15755954 GTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATT 15756013 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 ||||| ||||| || ||||| ||||||| ||| || ||||| | || ||| Sbjct 15756014 CCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGACCTCA 15756073 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || || || ||||| || || || || Sbjct 15756074 AGAGTTATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTG 15756114 >seq4 Length=20862834 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||| || || || || ||||| || || ||||| || || || ||||| ||| ||| Sbjct 13912527 ACTGTGCCCGCCTACTTCAATGACTCGCAGCGTCAGGCCACCAAGGATGCCGGACAGATT 13912468 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || |||||||||||||| ||| | || || || || |||||||| || || || || || Sbjct 13912467 GCCGGTCTTAATGTTTTGCGTGTGATCAACGAGCCCACAGCAGCGGCCCTGGCCTACGGC 13912408 Query 474866 CTTGATAAGA 474875 | ||||||| Sbjct 13912407 ATGGATAAGA 13912398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178942630888