Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq5 174 8e-39
>seq5
Length=28826359
Score = 174 bits (192), Expect = 8e-39
Identities = 317/458 (69%), Gaps = 7/458 (2%)
Strand=Plus/Minus
Query 25914 CATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTC 25973
||||| |||||| | ||| || | ||| |||||||| | || ||||| | ||| |
Sbjct 15307036 CATTTGCCTCAACACGTTTCATGAAAAGATCAGGAATCCATAAAGCGTAAAAAAGATCAC 15306977
Query 25974 TCGCTCTCATTTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCT 26032
|||| ||||||||||||| ||| ||||||| || ||||| || ||||||| ||||
Sbjct 15306976 GTGCTCGGTTTTCTTCTTTTCCAGTGTTTCTTTTG-AGGTCTAAAAACTCAAAAACATCT 15306918
Query 26033 GAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCT 26092
|| ||||| || |||||||| |||||||| ||| ||||||||| || || |||||
Sbjct 15306917 GAATGCCAGGGCTCTAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCA 15306858
Query 26093 ACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCG 26152
|| |||| || | ||| |||||| | |||||||||||||||||| | || |||
Sbjct 15306857 ACATATCGAGCCACATTATTAAAAACTCTTAACATTGGAACTAATCCATTCGACGTACCG 15306798
Query 26153 TTTGTGCTATGAATCTTG--GATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTC 26210
|| || | | || ||| | ||| | | | ||| ||| ||| | | |||||||
Sbjct 15306797 TTCGTTCCA--CATATTGAAGTGCCTTTAGCACGAATGCAATGAACATTAGT-CCGATTC 15306741
Query 26211 CACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGC 26270
|||| || |||| ||||| |||||| | | ||||| | ||||| |||| ||
Sbjct 15306740 CACCTGCTGATTTGGAAATCAGTGCACATTGTTCAACTGATTTAAAAATACCTTCAATTG 15306681
Query 26271 TATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAAT 26330
||| |||||| || | |||||| || || ||||| | || |||| | | |
Sbjct 15306680 AATCCGAATTCATTGTCAAAAGAAAACACGAGGACAATTGAGGTCGATTTGTAGCAGCAG 15306621
Query 26331 TAAATAATGTCGGTGTAGCATGAGTATAATATCCTTCA 26368
||| | || || | ||||| ||| | |||| ||||
Sbjct 15306620 CAAAAAGCGTTGGCGAGGCATGCGTAAAGTATCGTTCA 15306583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253039981496450
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |