Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq5 174 8e-39 >seq5 Length=28826359 Score = 174 bits (192), Expect = 8e-39 Identities = 317/458 (69%), Gaps = 7/458 (2%) Strand=Plus/Minus Query 25914 CATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTC 25973 ||||| |||||| | ||| || | ||| |||||||| | || ||||| | ||| | Sbjct 15307036 CATTTGCCTCAACACGTTTCATGAAAAGATCAGGAATCCATAAAGCGTAAAAAAGATCAC 15306977 Query 25974 TCGCTCTCATTTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCT 26032 |||| ||||||||||||| ||| ||||||| || ||||| || ||||||| |||| Sbjct 15306976 GTGCTCGGTTTTCTTCTTTTCCAGTGTTTCTTTTG-AGGTCTAAAAACTCAAAAACATCT 15306918 Query 26033 GAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCT 26092 || ||||| || |||||||| |||||||| ||| ||||||||| || || ||||| Sbjct 15306917 GAATGCCAGGGCTCTAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCA 15306858 Query 26093 ACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCG 26152 || |||| || | ||| |||||| | |||||||||||||||||| | || ||| Sbjct 15306857 ACATATCGAGCCACATTATTAAAAACTCTTAACATTGGAACTAATCCATTCGACGTACCG 15306798 Query 26153 TTTGTGCTATGAATCTTG--GATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTC 26210 || || | | || ||| | ||| | | | ||| ||| ||| | | ||||||| Sbjct 15306797 TTCGTTCCA--CATATTGAAGTGCCTTTAGCACGAATGCAATGAACATTAGT-CCGATTC 15306741 Query 26211 CACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGC 26270 |||| || |||| ||||| |||||| | | ||||| | ||||| |||| || Sbjct 15306740 CACCTGCTGATTTGGAAATCAGTGCACATTGTTCAACTGATTTAAAAATACCTTCAATTG 15306681 Query 26271 TATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAAT 26330 ||| |||||| || | |||||| || || ||||| | || |||| | | | Sbjct 15306680 AATCCGAATTCATTGTCAAAAGAAAACACGAGGACAATTGAGGTCGATTTGTAGCAGCAG 15306621 Query 26331 TAAATAATGTCGGTGTAGCATGAGTATAATATCCTTCA 26368 ||| | || || | ||||| ||| | |||| |||| Sbjct 15306620 CAAAAAGCGTTGGCGAGGCATGCGTAAAGTATCGTTCA 15306583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039981496450