Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 127 6e-24 seq5 111 5e-19 seq3 107 6e-18 >seq1 Length=22123056 Score = 127 bits (140), Expect = 6e-24 Identities = 188/265 (71%), Gaps = 1/265 (0%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| | ||| ||||| || || || ||| | |||||| || || ||| Sbjct 17689273 TCCATAGCCTTGATCAGACGTCGCTGGATGTAGCCGGTTTCGGCTGTTTTCACCGCCGTA 17689214 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| ||||||| ||||||||||||||| | | |||| || || || Sbjct 17689213 TCGATGAGACCCTCACGACCGCCCATAGCATGGAAGTAGAACTCTGAGGGAGTCAGACCG 17689154 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAG 302754 | | | | ||| |||| || || || |||| |||||| || ||| |||| | || Sbjct 17689153 GCTAGATACGAGTTCTCCACAAAGCCGCGCGACTCGGGACCATAATCGTCCTTGATGAAA 17689094 Query 302755 TGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGT 302814 || ||||| || | || | ||||| ||||||||||| || || || ||||| ||| Sbjct 17689093 TGCGGCAGTGTGCGCTTACGGAATCCGTACGGGATACGCTTGCCCTCCACATTCTGTTGT 17689034 Query 302815 CCCAGGCACGAAATCATCTGCGAAA 302839 |||| ||| | ||| | ||| |||| Sbjct 17689033 CCCACGCAAGCAATGACCTG-GAAA 17689010 >seq5 Length=28826359 Score = 111 bits (122), Expect = 5e-19 Identities = 716/1130 (63%), Gaps = 28/1130 (2%) Strand=Plus/Minus Query 155405 GTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGT 155464 ||| |||| ||| |||| || ||||||| ||| |||||||| ||||| | | |||| Sbjct 15307530 GTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCCTTAAATTGGACTT-CTTGG 15307472 Query 155465 CTTCTTGTTT-GGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCT 155523 ||||| | |||||| | || | || ||||| || || | |||| | | | | Sbjct 15307471 CTTCTGGCAAAGGGTAATAGTTGATGTCTATAATTTTGTTAAGATTTTTGGCAACAGTTT 15307412 Query 155524 TGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAA 155583 ||||||| ||| |||||| | ||| | ||||| || | |||| ||||| | Sbjct 15307411 TGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTTCTGCTGTTACGAACATGTTCA 15307352 Query 155584 GACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTACAAT 155641 | | || || || | ||| || || || |||| | || |||| || || ||||| Sbjct 15307351 GTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATCAG-GT-GCTGAGTACTCGACAAT 15307294 Query 155642 CTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTT 155701 || || | ||| | || || ||||| | ||| | || || || || || Sbjct 15307293 TTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTATT 15307234 Query 155702 ACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTT 155761 || | |||||| | || ||||||||| | || || |||| || | || | ||| Sbjct 15307233 GCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCACTTGCGATTCTATAATGGC 15307174 Query 155762 TAGCCAGAGGTCACGGGCATTAATTTGCTTG-TTGTATCTGCCTTCCGACTCATATTTCA 155820 | ||| | | |||| | | | | | | || | ||||| ||||||||| | Sbjct 15307173 AAACCATAAAGCCTGGGCTTCCACT-GTTCGATTCGCACGTCCTTCTTGCTCATATTTGA 15307115 Query 155821 TATACAGCGTTCGGTAA--TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGG 155878 ||| || ||| || | || || || ||| || ||||| || |||| || Sbjct 15307114 CATAGAG--TTCTTCAAATTTTTCGCCCCAAACATCTTGAAGGCCAGGACATTTATGTGG 15307057 Query 155879 GCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCA 155938 || | || ||||| ||| ||| | ||||| | ||| || | |||| ||| Sbjct 15307056 ACACATCAATGACCAGCTTTCATTTGCCTCAACACGTTTCATGAAAAGATCAGGAATCCA 15306997 Query 155939 AATAGCATAGAAAAGGTCCCTTGCCT--TTGACTCCTCATCGCCGTGATTCTTCCGTAGC 155996 | ||| || ||||| || | ||| || || || || | ||| ||||| | || Sbjct 15306996 TAAAGCGTAAAAAAGATCACGTGCTCGGTTTTCTTCTTTTC-CAGTGTTTCTTTTG-AGG 15306939 Query 155997 TCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTC 156056 ||||| || || || ||| | ||| ||||| | ||| |||||||| |||| Sbjct 15306938 TCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAAGGCACCAGGT 15306879 Query 156057 CTCTTGCCACC---CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGA 156113 || || ||||| |||||| ||||| ||||| ||||| || || | || ||| ||| Sbjct 15306878 CTTTTTCCACCTCCCTGATCAACATATCGAGCCACATTATTAAAAACTCTTAACATTGGA 15306819 Query 156114 A-TAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA---CCAGATGAGCGAAC 156169 | |||| ||||| || || || || ||||| | |||| ||| || | |||| Sbjct 15306818 ACTAAT-CCATTCGACGTACCGTTCGTTCCAC--ATATT-GAAGTGCCTTTAGCACGAAT 15306763 Query 156170 ATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTAC 156229 ||||| || |||||| || ||||||| |||| ||||| | || |||| | || Sbjct 15306762 GCAATGAACAT-TAGTCCGATTCCACCTGCTGATTTGGAAATCAGTGCACATTGTTCAAC 15306704 Query 156230 AGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAA 156289 | || |||||||||||||| ||||| | ||||| | ||| | ||||| || Sbjct 15306703 TGATTTAAAAATACCTTCAATTGAATCCGAATTCATTGTCAAAAGAAAACACGAGGACAA 15306644 Query 156290 TTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATT 156349 ||||||||| ||| |||| || || || || | ||||| |||| || | Sbjct 15306643 TTGAGGTCGATTTGTAGCAGCAGCAAAAAGCGTTGGCGAGGCATGCGTAAAGTATCGTTC 15306584 Query 156350 AGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGA 156409 ||||| | ||| || ||| | |||| || || ||||||| | || Sbjct 15306583 AGACAGTAGGTTGTAAGTTTCCACTGCCGCATCAATATCGTCTCCATGAATACCAAGAGC 15306524 Query 156410 GACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTA 156469 ||| | |||| ||| || || ||||| ||| |||| |||| || || || || Sbjct 15306523 GACGCGCATCAGCATGTGTTGTGGACGTTCTGCAATTTTCCCATTTATCTTAAGTAGATA 15306464 Query 156470 TGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGT 156519 | || || || || ||||| || ||||| | | | |||||| |||| Sbjct 15306463 GGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCAAAATCTCGGT 15306414 >seq3 Length=33007066 Score = 107 bits (118), Expect = 6e-18 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||| ||||||||| ||| || |||||||||||||||||||| || || |||||| | Sbjct 18978039 CGATTGTCATACGAGAGGGGATGGCATGGGGATTGATGATGATATCAGGGGCCAGTCCCT 18977980 Query 251903 CAGCAG-TGAAGGGCATATCCTTTTCCTCAATAATGTTTCCAATA-GTTCCCTTTTGTCC 251960 | |||| |||||||||| |||| | | | ||| || ||| | | |||||||| ||||| Sbjct 18977979 C-GCAGGTGAAGGGCATGTCCTCCTGC-CGATACTGGATCCCACACGTTCCCTTCTGTCC 18977922 Query 251961 GTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTT 252020 |||||| || ||||| || || || ||| ||| || || | |||| ||| Sbjct 18977921 GTGACGGGAGGCAAACTTGTCGCCGATCTGTGGAATGCGCACGGAGCGCACTCGAATCTT 18977862 Query 252021 ACAGAAGTTGTAACCATCACCGTTG 252045 ||||| ||||| || || | |||| Sbjct 18977861 GCAGAACTTGTAGCCCTCGCTGTTG 18977837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817486854022