Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 161 1e-33 seq3 125 9e-23 seq4 102 1e-15 >seq2 Length=30136903 Score = 161 bits (178), Expect = 1e-33 Identities = 246/347 (71%), Gaps = 4/347 (1%) Strand=Plus/Plus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGG 1573954 |||||| || ||| ||||||||||||| ||| ||| ||||| || |||| | || Sbjct 23070011 GGGTCCTCCTGGCGTTGGCAAGACCACGACCATTCAGTGCCTGGCCCGCATCCTGCTCGG 23070070 Query 1573955 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGT 1574014 | | | | ||||| ||||| || || || || ||| ||||||| ||| |||| || Sbjct 23070071 AGACAGCTACAAGGAGGCAGTGCTGGAGCTGAATGCCTCGAACGAGCGTGGCATCGATGT 23070130 Query 1574015 CGTGCGCAAGATCATCAAGCACCACGCCTC-CAAGAGGATCGAC-CTGCCGCCCGGACGC 1574072 |||||||| | |||||| ||| ||| ||| ||| || || || || Sbjct 23070131 GGTGCGCAACAAGATCAAGATGTTTGCCCAGCAAAAGGT--GACGCTACCCAAGGGCCGT 23070188 Query 1574073 CACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTG 1574132 |||||| | | ||||| |||||||| ||| || | ||| || ||||||||||| ||| Sbjct 23070189 CACAAGATCGTTATCCTGGACGAGGCGGACAGCATGACGGAGGGCGCCCAGCAGGCGCTG 23070248 Query 1574133 CGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCG 1574192 || ||||||||| | ||| ||||||||| ||||| |||||||| |||||||| Sbjct 23070249 CGTCGCACCATGGAGATCTACAGCAACACGACTCGCTTCGCCCTGGCCTGCAACACCAGC 23070308 Query 1574193 TCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTT 1574239 || | |||||||| | | ||| ||||||||||| |||||||| Sbjct 23070309 GAGAAGATCATCGAGCCGATACAATCGCGCTGCGCCATGCTGCGCTT 23070355 Score = 136 bits (150), Expect = 5e-26 Identities = 333/493 (68%), Gaps = 14/493 (3%) Strand=Plus/Plus Query 1852163 AAGGCAAATATCTTGCGCTGGTCG-CGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTG 1852221 |||| || ||||||||||| ||| ||||| |||||||||||||| || | |||| | Sbjct 19998711 AAGGTGAAGATCTTGCGCTGATCGACGCCC-CCAAACTGGGCGTCCACCTTCAGGTATTC 19998769 Query 1852222 CTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCAT 1852281 |||||| |||||||||| || ||||||| | || ||||| | || Sbjct 19998770 CTCGTCCAGGGCCTGCAGTCCTGGATAGAGCAGGCCCGAGAGCAGCGGATACTCTACCTG 19998829 Query 1852282 CTTGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGCCG-GTGCGCACGTGCGCCGCGAG 1852338 || || |||| ||| | ||||| | || ||||| | ||| ||| || | || Sbjct 19998830 TTTAACGACCTCGGCGCCCGCCTTCTTGGCATCGTGCTGCGTGACCAC---CGAGGATAG 19998886 Query 1852339 TCGGTAGAGGTCGAGCGCGTAGGCGCCGCCG-CA-CTGGTACTCGGTGCCGCGCACAAAC 1852396 ||| | ||| || | ||| | || | || |||||| ||| |||| |||||| Sbjct 19998887 CTTGTACACGTCCAGAGTGTA--CTCCTTGGACAGCTGGTAGTCGCTGCCCTTGACAAAC 19998944 Query 1852397 TCGAGTCCGCCCAGCGGCACGCCGATGT-GCTGGAGCATGGCCTTGATGGCAAACTCGTA 1852455 | || ||||||| ||||||||| ||| |||||||||||||| | |||||| Sbjct 19998945 TTCAGCTTCTCCAGCGGAACGCCGATGGAGCTC-AGCATGGCCTTGATCACCTGCTCGTA 19999003 Query 1852456 CCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTG 1852515 | || || | || | ||| ||| |||| || |||||| || | |||||| Sbjct 19999004 GTACTGGGTGCGCAGCTCCAGCAGCGACCAGGGCGCTTTCATGTTGTCCAGATAGGCGTG 19999063 Query 1852516 CACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAA 1852575 | |||||||| || || | ||| |||||||||| || |||||||| | || | Sbjct 19999064 GAGATCGGCAAACAGAATGGTTACCTCGCAGCCGGCCTTTAGGAAGTCGGCAATCTTCGA 19999123 Query 1852576 GATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATGAT 1852635 || |||||||||||| | | || || || ||||||| |||||| ||||| || || | Sbjct 19999124 CATCGGCACAAAGTAGGCGACATGTGGCTTTCCCGTCGTCGCCGTTCCCCAGTAGATCTT 19999183 Query 1852636 CAGGGGGCGCTCG 1852648 ||| ||||||| Sbjct 19999184 TAGGTCGCGCTCG 19999196 Score = 105 bits (116), Expect = 8e-17 Identities = 134/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 1592113 CACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTT 1592172 ||||||||||||| || |||||||| ||||| | | || |||||| ||| || | Sbjct 18629409 CACCGACGACATCATTCCCTGGGACAACGAGTTCCTCAAGGTGGAGCAGAGCACTCTGGT 18629350 Query 1592173 TGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTG-CA 1592231 ||| | || || |||||||| ||| | ||||||||| | || | | | || || || Sbjct 18629349 CGAGCTAATGCTGGCCGCCAATTACATGGACATCAAGGGTTTGAT-GCACCTGATTGCCA 18629291 Query 1592232 AGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACA 1592291 || ||||||||||||||||||||||| |||||| |||| || ||||||| ||| Sbjct 18629290 AGCACCTGGCCAACATGATCAAGGGCAAGATTCCCGAGCAGATACGTCAGACCTTCCACA 18629231 Query 1592292 TC 1592293 || Sbjct 18629230 TC 18629229 Score = 100 bits (110), Expect = 3e-15 Identities = 133/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 1592113 CACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTT 1592172 ||| ||||||||| || ||||||| ||||| | | || ||||| ||| || | Sbjct 18630404 CACTGACGACATCATTCCCTGGGACATCGAGTTCCTCAAAGTGGAGCAAAACACTCTGGT 18630345 Query 1592173 TGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGC-A 1592231 ||| | || || |||||||| ||| | |||||||| | || | | |||| ||| | Sbjct 18630344 CGAGCTAATGCTGGCCGCCAATTACATGGACATCAATGGTTTGATGCA-CTTGATTGCCA 18630286 Query 1592232 AGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACA 1592291 || ||||||||||||||||||||||| | |||||| |||| || ||||||| |||| Sbjct 18630285 AGCACCTGGCCAACATGATCAAGGGCAAGACTCCCGAGCAGATACGTCAGACCTTCAACA 18630226 Query 1592292 TC 1592293 || Sbjct 18630225 TC 18630224 Score = 91.5 bits (100), Expect = 2e-12 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 1592113 CACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTT 1592172 ||| ||||||||| || ||||||| ||||| | | || |||||| ||| || || Sbjct 18631401 CACTGACGACATCATTCCCTGGGACATCGAGTTCCTCAAGGTGGAGCAGAGCACTCTGTT 18631342 Query 1592173 TGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGC-A 1592231 ||| | || |||||||| ||| | |||||||| | || | | |||| ||| | Sbjct 18631341 CGAGCTAGCGCTGGCCGCCAATTACATGGACATCAATGGTTTGATGCA-CTTGATTGCCA 18631283 Query 1592232 AGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACA 1592291 || ||||||||||||||||||||||| | | |||| |||| || ||||||| ||| Sbjct 18631282 AGCACCTGGCCAACATGATCAAGGGCAAGACTCTCGAGCAGATACGTTAGACCTTCCACA 18631223 Query 1592292 TC 1592293 || Sbjct 18631222 TC 18631221 Score = 91.5 bits (100), Expect = 2e-12 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 1592113 CACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTT 1592172 ||||||||||||| || |||||||| ||||| | | || || ||| ||| |||| Sbjct 18632596 CACCGACGACATCATTCCCTGGGACAACGAGTTCCTCAAGGTGGACCAGGACACTATCTT 18632537 Query 1592173 TGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTG-CA 1592231 ||| | || || |||||||| ||| | ||||||||| | || | | || || || Sbjct 18632536 CGAGCTAATGCTGGCCGCCAATTACATGGACATCAAGGGTTTG-AGGCACCTGACTGCCA 18632478 Query 1592232 AGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACA 1592291 || || |||||||||||||||||||| |||||| |||| || ||| ||| ||| Sbjct 18632477 AGCACATGACCAACATGATCAAGGGCAAGATTCCCGAGCAGATACGTCAGAACTTGCACA 18632418 Query 1592292 TC 1592293 || Sbjct 18632417 TC 18632416 >seq3 Length=33007066 Score = 125 bits (138), Expect = 9e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1592100 AGGACCAGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGC 1592159 ||||| ||||||||||||||||||| |||||||| || || | | || || | Sbjct 27415405 AGGACAAGAAGCGCACCGACGACATTATCCCGTGGGATGCCGAATTCCTCAAGGTAGACC 27415464 Query 1592160 AGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCG 1592219 || ||| ||||| ||| | || || |||||||| || || || |||||| | ||| || Sbjct 27415465 AGGGCACACTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATATCAAGGGTTTGCACG 27415524 Query 1592220 ATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCA 1592279 | | |||||| | |||||||| ||||| | ||||||| | || ||||| || |||| Sbjct 27415525 AGGTGTCTTGCAAGACCGTGGCCAATATGATGATGGGCAAGACTCCAGAGGAAATACGCA 27415584 Query 1592280 AGACCTTTAACATCAAG 1592296 |||| || ||||||||| Sbjct 27415585 AGACTTTCAACATCAAG 27415601 Score = 109 bits (120), Expect = 7e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 1592107 GAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCAC 1592166 ||||||||||||||| || |||||||| || || | | || || ||| ||| Sbjct 27409718 GAAGCGCACCGACGAAATTATCCCGTGGGATGCCGAATTCCTCAAGGTAGACCAGGGCAC 27409777 Query 1592167 CCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGG 1592226 ||||| ||| | || || |||||||| || || || ||||| | |||||| | Sbjct 27409778 ACTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATGTCAAGGGTTTGCTCGCGGTGTC 27409837 Query 1592227 GTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTT 1592286 |||||| | |||||||| ||||| | ||||||| | || ||||| || |||||||| || Sbjct 27409838 TTGCAAGACCGTGGCCAATATGATGATGGGCAAGACTCCAGAGGAAATACGCAAGACTTT 27409897 Query 1592287 TAACATCAAG 1592296 ||||||||| Sbjct 27409898 CAACATCAAG 27409907 Score = 100 bits (110), Expect = 3e-15 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 1592107 GAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCAC 1592166 |||||||||||||||||| |||||||| || || | | || || | | || Sbjct 27408208 GAAGCGCACCGACGACATTATCCCGTGGGATGCCGAATTCCTCAAGGTAGACCTGGGCAT 27408267 Query 1592167 CCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGG 1592226 ||||| ||| | || || |||||||| || || || |||||| | ||||| | | Sbjct 27408268 ACTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATATCAAGGGTTTGCTCAAAGTGTC 27408327 Query 1592227 GTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTT 1592286 |||||| | |||||||| ||||| ||||| || || ||||| || |||||||| || Sbjct 27408328 TTGCAAGACCGTGGCCAATATGATTAAGGGTAAAAGTCCAGAGGAAATACGCAAGACTTT 27408387 Query 1592287 TAACATCAAG 1592296 ||||||||| Sbjct 27408388 CAACATCAAG 27408397 Score = 100 bits (110), Expect = 3e-15 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 1592107 GAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCAC 1592166 |||||||||||||||||| |||||||| || || | | || || | | || Sbjct 27411700 GAAGCGCACCGACGACATTATCCCGTGGGATGCCGAATTCCTCAAGGTAGACCTGGGCAT 27411759 Query 1592167 CCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGG 1592226 ||||| ||| | || || |||||||| || || || |||||| | ||||||| | Sbjct 27411760 ACTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATATCAAGGGTTTGCTCGAGGTGTC 27411819 Query 1592227 GTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTT 1592286 |||| | | |||||||| ||||| ||||| || || ||||| || |||||||| || Sbjct 27411820 TTGCACGCCCGTGGCCAATATGATTAAGGGTAAAAGTCCAGAGGAAATACGCAAGACTTT 27411879 Query 1592287 TAACATCAAG 1592296 ||||||||| Sbjct 27411880 CAACATCAAG 27411889 >seq4 Length=20862834 Score = 102 bits (112), Expect = 1e-15 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||||||| |||| | ||| || ||||| ||||| || || |||||||||| |||||| Sbjct 15862453 GTACTCGGCCACCTTCTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCAT 15862512 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | ||| || || || |||||| ||| | |||||| | | ||||| || Sbjct 15862513 GAAATTGAAAGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAGCCG 15862572 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 ||||| || ||||||||||||||| ||||||| | ||||||||| || | || Sbjct 15862573 ATCGGCCACGAACTCGATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATTGAC 15862632 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934 ||||| | || | | ||||| | |||||| || || || || |||||||| Sbjct 15862633 GGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCT 15862688 Score = 100 bits (110), Expect = 3e-15 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||||||||| || ||||| |||||| |||| || ||||||||||| || ||||| Sbjct 15862759 ACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 15862818 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| ||||||||||| | | || ||||| || ||||| || || ||||| ||||| Sbjct 15862819 CTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTAAAGAAGATTCCTTCCACGGCCGCAAA 15862878 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTG 869323 | | || | |||||||||||| || Sbjct 15862879 GGCAATAATACGCTCGGCAAAGTTG 15862903 Score = 98.7 bits (108), Expect = 1e-14 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| | ||||| ||||| |||||||||||||| ||| | |||| | | || Sbjct 15863042 GAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCCGTGATCTGC 15863101 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||||| | || || || |||| |||||| || |||||||| ||| ||||| Sbjct 15863102 ACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAG 15863161 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT-GGAC 869811 || || || || || |||||||| |||||||| ||| |||| |||||| | | Sbjct 15863162 AAGGCTAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGTC 15863221 Query 869812 GGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 | | || | || |||||||| || ||||||||| |||||||| |||| Sbjct 15863222 GCGTCCTTCGAT-AGATCCACCTCTTCCACGGTCCAGAAGGAGGCCTCCGCCT 15863273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107138707611902