Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5 257 2e-63 seq2 120 3e-22 seq1 116 3e-21 >seq5 Length=28826359 Score = 257 bits (284), Expect = 2e-63 Identities = 1135/1783 (64%), Gaps = 38/1783 (2%) Strand=Plus/Minus Query 138154 TTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCC 138213 || || |||||||| | ||| || | ||||| ||||| || | | ||| |||||||| Sbjct 15308261 TTGTCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCCG 15308202 Query 138214 GTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGGT 138273 ||||||| ||| || ||||| | | | ||||| || || | | |||| | || Sbjct 15308201 GTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGGC 15308142 Query 138274 TTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGCC 138333 | || | | |||||||| ||||| ||||| || || || |||| |||| ||| Sbjct 15308141 TCTGCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCC 15308082 Query 138334 ATGTTAATTAAAT-TTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATATG 138392 || |||||| ||||||| || ||||| || || || || ||||| |||| | Sbjct 15308081 ATTTTAATTGTGGATTTTACTGAA-ATTTCCCATACAGTTTTATAAAGATCGCGAACCTT 15308023 Query 138393 TCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCAT 138452 | | || || ||| |||||| ||||||| || || | ||| || |||| |||| Sbjct 15308022 TTGGGGAATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAAATTATTTTATTTTTCAT 15307963 Query 138453 GTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTAT-GACC- 138510 ||||| | | | | ||||| | || || | | ||| || | || |||| Sbjct 15307962 CTCATCATCCCATAAGTCCAACTCTGTTAAATCCCTCA----ATAAATGATGATTGACCA 15307907 Query 138511 --TGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACG 138568 ||||||||||| | |||||||| | ||||| || |||| | || || || | Sbjct 15307906 CTTGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATG 15307847 Query 138569 ATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAG 138628 ||||||| || |||| ||| || || || | || || ||||| ||| || || | | Sbjct 15307846 ATTCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACG 15307787 Query 138629 AATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGC 138688 |||||| | ||||| || || ||| || || ||| ||||| | | Sbjct 15307786 AATTCCTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGCCAATCCCATAGGTTCG 15307727 Query 138689 TAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGT 138748 | || |||| | ||||||||| || |||| ||||| ||| | ||||| ||||| | Sbjct 15307726 TTGGAGTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGACTTCCTTCAT 15307667 Query 138749 ACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGT 138808 | | || ||| |||||| |||| || | || || || || || || ||| | | Sbjct 15307666 AGGTTTCATATGGACCAAATGCTTGAGCAAGTTCACAACTAGCTTCTAGAGCTCCAAAAT 15307607 Query 138809 AAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGC 138868 |||| ||||| || || || || | | | ||| || |||| || || || | | Sbjct 15307606 AAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAAC 15307547 Query 138869 GGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCA 138928 | | | | || ||||| || || ||||| | || | |||| || ||||| | | Sbjct 15307546 GCATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCCTTA 15307487 Query 138929 GATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAAT 138988 ||| ||| || || || | ||| |||||||| | || || |||||||| | || Sbjct 15307486 AATTGGACTTCTTGGCTTCTGGCAAAGGGTAATAGTTGATGTCTATAATTTTGTTAAGAT 15307427 Query 138989 TTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGT 139048 || | || || || | |||||| || ||||| || || | || Sbjct 15307426 TTTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTTC--TGC 15307369 Query 139049 CGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTT 139108 || |||| ||| |||| | || || |||| ||||| || || | | Sbjct 15307368 TGTT-ACGA-----ACA----TGTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCT 15307319 Query 139109 CGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTA 139168 | || || | ||| ||||||||||| | ||| |||||||| || || || || || | Sbjct 15307318 CATCAGGTGCTGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAA 15307259 Query 139169 AATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAG 139228 ||||||||||||||| |||| || || | ||| || ||||||| || || | |||| Sbjct 15307258 CATTTTGTTGATTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAG 15307199 Query 139229 TTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTT---GTATTTGA--CG 139283 |||||||||| | ||||||||| | || || |||| | || || || Sbjct 15307198 TTTCCACTTGCGATTCTATAATGGCAAACCATAAAGCCTGGGCTTCCACTGTTCGATTCG 15307139 Query 139284 CACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGC 139343 ||| || | || |||| || || | |||||||| || ||| ||| || | | Sbjct 15307138 CAC-----GTCCTTCTTGCTCATATTTGACATAGAGTTCTTCAAATTTTTCGCCCCAAAC 15307084 Query 139344 GTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGAC 139403 || ||| | |||| || | |||||||| | ||||| | || |||| || Sbjct 15307083 ATCTTGAAGGCCAGGACATTTATGTGGACACATCAATGACCAGCTTTCATTTGCCTCAAC 15307024 Query 139404 GCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATC 139463 || ||||||| ||||| |||||||| |||||| | | | ||| || || || || Sbjct 15307023 ACGTTTCATGAAAAGATCAGGAATCCATAAAGCGTAAAAAAGATCACGTGCTCGGTTTTC 15306964 Query 139464 TTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTC 139523 ||| || |||| | ||| | || | || |||||||| || | ||||| || || Sbjct 15306963 TTCTTTTCCAGTGTTTCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTC 15306904 Query 139524 CAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCT---TGATCGACGTGTCGTACAGC 139580 | ||| || || | || || | ||| |||||| ||||| || | ||| | | Sbjct 15306903 TAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGAGCCAC 15306844 Query 139581 ATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGAT 139640 |||||| || || | ||||| || | | || ||| || ||||| || | || || Sbjct 15306843 ATTATTAAAAACTCTTAACATTGGAACTAATCCATTCGACGTACCGTTCGTTCCACATAT 15306784 Query 139641 GGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGA 139700 | | || ||| || | | ||| ||||| | |||||||| || | ||||||| Sbjct 15306783 TGAAGTGCCTTTAGCACGAATGCAATGAACATT-AGTCCGATTCCACCTGCTGATTTGGA 15306725 Query 139701 TATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGT 139760 || | | || | | || | | |||||| || || | ||| || Sbjct 15306724 AATCAGTGCACATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCATTGT 15306665 Query 139761 GACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACT 139820 | ||||| || || || | ||| ||| | || || | || ||||| || || || Sbjct 15306664 CAAAAGAAAACACGAGGACAATTGAGGTCGATTTGTAGCAGCAGCAAAAAGCGTTGGCGA 15306605 Query 139821 CGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGA-TGGCGCTCACAATAT 139879 || ||||| || | ||| |||| | | ||| ||||| | || ||| |||||| Sbjct 15306604 GGCATGCGTAAAGTATCGTTCAGACAGTAGGTTGTAAGTTTCCACTGCCGC-ATCAATAT 15306546 Query 139880 CCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 | ||| || ||||| | || ||| ||||||||||| ||||| Sbjct 15306545 CGTCTCCATGAATACCAAGAGCGACGCGCATCAGCATGTGTTG 15306503 Score = 136 bits (150), Expect = 4e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || || ||||| || || || || || || || || ||| | Sbjct 15756120 ACCATGCAGATCTTTGTAAAGACCCTAACGGGCAAGACCATAACTCTTGAGGTCGAACCT 15756061 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | |||| || ||| |||||||| |||||||||||||| ||||| ||| Sbjct 15756060 TCGGATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGAT 15756001 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 ||||| ||||||||||| || || || || |||| ||| ||| |||| |||||| Sbjct 15756000 CAACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACACTGTCTGATTAT 15755941 Query 24881 AACATTCAAAAGGAATCGAC 24900 |||||||| ||||| || || Sbjct 15755940 AACATTCAGAAGGAGTCCAC 15755921 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| || || || || || || || | || || || || | Sbjct 28457679 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTCT 28457620 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || ||||| Sbjct 28457619 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 28457560 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || |||||||||||| | | |||| || || ||| Sbjct 28457559 CAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 28457500 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||||||||| | || ||||||| || Sbjct 28457499 ATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGCGGTGG 28457453 >seq2 Length=30136903 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 |||||||||||| | ||||| | || || ||||| || || || || || || |||| | Sbjct 19092778 ATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAGGTGGA-GCCATC 19092720 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| || ||||| || || || || Sbjct 19092719 CGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCA 19092660 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| ||||| || |||||||||||| | | | || || || || Sbjct 19092659 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAA 19092600 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| ||||| || || |||||| |||| | ||||| || Sbjct 19092599 CATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCGTCTCCGCGGTGG 19092552 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 |||||||| || | || || || ||||| ||||| || || || || || || |||| | Sbjct 19092550 ATGCAGATATTCGTGAAGACTCTGACCGGAAAAACCATCACCCTGGAGGTGGA-GCCATC 19092492 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| || ||||| || || || || Sbjct 19092491 CGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCA 19092432 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| || || || |||||||||||| | | | || || || || Sbjct 19092431 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAA 19092372 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || ||||| ||||| || || |||||| |||| Sbjct 19092371 CATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCG 19092336 >seq1 Length=22123056 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || || || || || || ||||| || || || | Sbjct 6630355 ATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCTCG 6630414 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || ||||| Sbjct 6630415 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6630474 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| ||||| || ||||||||||| | | |||| || || ||| Sbjct 6630475 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAAC 6630534 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 || || ||||| || || | |||||||| ||||| | || || |||| Sbjct 6630535 ATCCAGAAGGAGTCCACTTTGCACTTGGTATTGCGTCTTCGTGGCGGCG 6630583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897566257680