Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq5 257 2e-63
seq2 120 3e-22
seq1 116 3e-21
>seq5
Length=28826359
Score = 257 bits (284), Expect = 2e-63
Identities = 1135/1783 (64%), Gaps = 38/1783 (2%)
Strand=Plus/Minus
Query 138154 TTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCC 138213
|| || |||||||| | ||| || | ||||| ||||| || | | ||| ||||||||
Sbjct 15308261 TTGTCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCCG 15308202
Query 138214 GTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGGT 138273
||||||| ||| || ||||| | | | ||||| || || | | |||| | ||
Sbjct 15308201 GTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGGC 15308142
Query 138274 TTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGCC 138333
| || | | |||||||| ||||| ||||| || || || |||| |||| |||
Sbjct 15308141 TCTGCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCC 15308082
Query 138334 ATGTTAATTAAAT-TTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATATG 138392
|| |||||| ||||||| || ||||| || || || || ||||| |||| |
Sbjct 15308081 ATTTTAATTGTGGATTTTACTGAA-ATTTCCCATACAGTTTTATAAAGATCGCGAACCTT 15308023
Query 138393 TCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCAT 138452
| | || || ||| |||||| ||||||| || || | ||| || |||| ||||
Sbjct 15308022 TTGGGGAATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAAATTATTTTATTTTTCAT 15307963
Query 138453 GTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTAT-GACC- 138510
||||| | | | | ||||| | || || | | ||| || | || ||||
Sbjct 15307962 CTCATCATCCCATAAGTCCAACTCTGTTAAATCCCTCA----ATAAATGATGATTGACCA 15307907
Query 138511 --TGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACG 138568
||||||||||| | |||||||| | ||||| || |||| | || || || |
Sbjct 15307906 CTTGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATG 15307847
Query 138569 ATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAG 138628
||||||| || |||| ||| || || || | || || ||||| ||| || || | |
Sbjct 15307846 ATTCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACG 15307787
Query 138629 AATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGC 138688
|||||| | ||||| || || ||| || || ||| ||||| | |
Sbjct 15307786 AATTCCTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGCCAATCCCATAGGTTCG 15307727
Query 138689 TAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGT 138748
| || |||| | ||||||||| || |||| ||||| ||| | ||||| ||||| |
Sbjct 15307726 TTGGAGTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGACTTCCTTCAT 15307667
Query 138749 ACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGT 138808
| | || ||| |||||| |||| || | || || || || || || ||| | |
Sbjct 15307666 AGGTTTCATATGGACCAAATGCTTGAGCAAGTTCACAACTAGCTTCTAGAGCTCCAAAAT 15307607
Query 138809 AAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGC 138868
|||| ||||| || || || || | | | ||| || |||| || || || | |
Sbjct 15307606 AAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAAC 15307547
Query 138869 GGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCA 138928
| | | | || ||||| || || ||||| | || | |||| || ||||| | |
Sbjct 15307546 GCATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCCTTA 15307487
Query 138929 GATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAAT 138988
||| ||| || || || | ||| |||||||| | || || |||||||| | ||
Sbjct 15307486 AATTGGACTTCTTGGCTTCTGGCAAAGGGTAATAGTTGATGTCTATAATTTTGTTAAGAT 15307427
Query 138989 TTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGT 139048
|| | || || || | |||||| || ||||| || || | ||
Sbjct 15307426 TTTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTTC--TGC 15307369
Query 139049 CGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTT 139108
|| |||| ||| |||| | || || |||| ||||| || || | |
Sbjct 15307368 TGTT-ACGA-----ACA----TGTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCT 15307319
Query 139109 CGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTA 139168
| || || | ||| ||||||||||| | ||| |||||||| || || || || || |
Sbjct 15307318 CATCAGGTGCTGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAA 15307259
Query 139169 AATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAG 139228
||||||||||||||| |||| || || | ||| || ||||||| || || | ||||
Sbjct 15307258 CATTTTGTTGATTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAG 15307199
Query 139229 TTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTT---GTATTTGA--CG 139283
|||||||||| | ||||||||| | || || |||| | || || ||
Sbjct 15307198 TTTCCACTTGCGATTCTATAATGGCAAACCATAAAGCCTGGGCTTCCACTGTTCGATTCG 15307139
Query 139284 CACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGC 139343
||| || | || |||| || || | |||||||| || ||| ||| || | |
Sbjct 15307138 CAC-----GTCCTTCTTGCTCATATTTGACATAGAGTTCTTCAAATTTTTCGCCCCAAAC 15307084
Query 139344 GTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGAC 139403
|| ||| | |||| || | |||||||| | ||||| | || |||| ||
Sbjct 15307083 ATCTTGAAGGCCAGGACATTTATGTGGACACATCAATGACCAGCTTTCATTTGCCTCAAC 15307024
Query 139404 GCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATC 139463
|| ||||||| ||||| |||||||| |||||| | | | ||| || || || ||
Sbjct 15307023 ACGTTTCATGAAAAGATCAGGAATCCATAAAGCGTAAAAAAGATCACGTGCTCGGTTTTC 15306964
Query 139464 TTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTC 139523
||| || |||| | ||| | || | || |||||||| || | ||||| || ||
Sbjct 15306963 TTCTTTTCCAGTGTTTCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTC 15306904
Query 139524 CAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCT---TGATCGACGTGTCGTACAGC 139580
| ||| || || | || || | ||| |||||| ||||| || | ||| | |
Sbjct 15306903 TAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGAGCCAC 15306844
Query 139581 ATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGAT 139640
|||||| || || | ||||| || | | || ||| || ||||| || | || ||
Sbjct 15306843 ATTATTAAAAACTCTTAACATTGGAACTAATCCATTCGACGTACCGTTCGTTCCACATAT 15306784
Query 139641 GGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGA 139700
| | || ||| || | | ||| ||||| | |||||||| || | |||||||
Sbjct 15306783 TGAAGTGCCTTTAGCACGAATGCAATGAACATT-AGTCCGATTCCACCTGCTGATTTGGA 15306725
Query 139701 TATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGT 139760
|| | | || | | || | | |||||| || || | ||| ||
Sbjct 15306724 AATCAGTGCACATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCATTGT 15306665
Query 139761 GACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACT 139820
| ||||| || || || | ||| ||| | || || | || ||||| || || ||
Sbjct 15306664 CAAAAGAAAACACGAGGACAATTGAGGTCGATTTGTAGCAGCAGCAAAAAGCGTTGGCGA 15306605
Query 139821 CGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGA-TGGCGCTCACAATAT 139879
|| ||||| || | ||| |||| | | ||| ||||| | || ||| ||||||
Sbjct 15306604 GGCATGCGTAAAGTATCGTTCAGACAGTAGGTTGTAAGTTTCCACTGCCGC-ATCAATAT 15306546
Query 139880 CCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922
| ||| || ||||| | || ||| ||||||||||| |||||
Sbjct 15306545 CGTCTCCATGAATACCAAGAGCGACGCGCATCAGCATGTGTTG 15306503
Score = 136 bits (150), Expect = 4e-27
Identities = 150/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| |||||||||||| | || || ||||| || || || || || || || || ||| |
Sbjct 15756120 ACCATGCAGATCTTTGTAAAGACCCTAACGGGCAAGACCATAACTCTTGAGGTCGAACCT 15756061
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| || || | |||| || ||| |||||||| |||||||||||||| ||||| |||
Sbjct 15756060 TCGGATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGAT 15756001
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
||||| ||||||||||| || || || || |||| ||| ||| |||| ||||||
Sbjct 15756000 CAACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACACTGTCTGATTAT 15755941
Query 24881 AACATTCAAAAGGAATCGAC 24900
|||||||| ||||| || ||
Sbjct 15755940 AACATTCAGAAGGAGTCCAC 15755921
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | ||||| || || || || || || || | || || || || |
Sbjct 28457679 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTCT 28457620
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || || |||||
Sbjct 28457619 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 28457560
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| ||||||| ||||| || |||||||||||| | | |||| || || |||
Sbjct 28457559 CAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 28457500
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| ||||| || ||||||||| | || ||||||| ||
Sbjct 28457499 ATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGCGGTGG 28457453
>seq2
Length=30136903
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762
|||||||||||| | ||||| | || || ||||| || || || || || || |||| |
Sbjct 19092778 ATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAGGTGGA-GCCATC 19092720
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || | || || |||||||| ||||| || ||||| || || || ||
Sbjct 19092719 CGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCA 19092660
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| ||| | ||||| ||||| || |||||||||||| | | | || || || ||
Sbjct 19092659 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAA 19092600
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||| || ||||| ||||| || || |||||| |||| | ||||| ||
Sbjct 19092599 CATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCGTCTCCGCGGTGG 19092552
Score = 107 bits (118), Expect = 2e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762
|||||||| || | || || || ||||| ||||| || || || || || || |||| |
Sbjct 19092550 ATGCAGATATTCGTGAAGACTCTGACCGGAAAAACCATCACCCTGGAGGTGGA-GCCATC 19092492
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || | || || |||||||| ||||| || ||||| || || || ||
Sbjct 19092491 CGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCA 19092432
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| ||| | ||||| || || || |||||||||||| | | | || || || ||
Sbjct 19092431 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAA 19092372
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
||| || ||||| ||||| || || |||||| ||||
Sbjct 19092371 CATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCG 19092336
>seq1
Length=22123056
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | ||||| || || || || || || || ||||| || || || |
Sbjct 6630355 ATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCTCG 6630414
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || || |||||
Sbjct 6630415 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6630474
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||||||||||| ||||| || ||||||||||| | | |||| || || |||
Sbjct 6630475 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAAC 6630534
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932
|| || ||||| || || | |||||||| ||||| | || || ||||
Sbjct 6630535 ATCCAGAAGGAGTCCACTTTGCACTTGGTATTGCGTCTTCGTGGCGGCG 6630583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449897566257680
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