Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq2 127 3e-23
seq3 122 1e-21
seq4 113 7e-19
seq1 102 1e-15
>seq2
Length=30136903
Score = 127 bits (140), Expect = 3e-23
Identities = 317/474 (67%), Gaps = 8/474 (2%)
Strand=Plus/Plus
Query 2411506 AAGGCAAAGATCTTGCGCTGGTCG-CGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTG 2411564
|||| |||||||||||||| ||| ||||| |||||||||||||| || | |||| |
Sbjct 19998711 AAGGTGAAGATCTTGCGCTGATCGACGCCC-CCAAACTGGGCGTCCACCTTCAGGTATTC 19998769
Query 2411565 CTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTGCGGTCCAT 2411624
|||||| |||||||||| || |||| ||| |||| |||| | ||
Sbjct 19998770 CTCGTCCAGGGCCTGCAGTCCTGGATAGAGCAGGCCCGAGAGCAGCGGATACTCTACCTG 19998829
Query 2411625 CTTGACCACCTGGGCGGCGGCCTTTTGCGC--CGTGCCGACGGTCACGCGCGCCGTCAGG 2411682
|| || |||| |||| | ||||| | || ||||| | || || || | ||
Sbjct 19998830 TTTAACGACCTCGGCGCCCGCCTTCTTGGCATCGTGCTGC--GTGACCACCGAGGATAGC 19998887
Query 2411683 CGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAAATTCG 2411742
| | ||| || ||||| | | ||||||| |||||||| ||||| |
Sbjct 19998888 TTGTACACGTCCAGAGTGTACTCCTTGGACAGCTGGTAGTCGCTGCCCTTGACAAACTTC 19998947
Query 2411743 AGACGATCCAGCGGGACGCCAATGT-GCTGGAGCATGGCCTTGATGGCAAACTCGTACCA 2411801
|| |||||||| ||||| ||| ||| |||||||||||||| | |||||| |
Sbjct 19998948 AGCTTCTCCAGCGGAACGCCGATGGAGCTC-AGCATGGCCTTGATCACCTGCTCGTAGTA 19999006
Query 2411802 GCGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCAC 2411861
|| || |||| | || ||| |||| || ||||| || | |||||| |
Sbjct 19999007 CTGGGTGCGCAGCTCCAGCAGCGACCAGGGCGCTTTCATGTTGTCCAGATAGGCGTGGAG 19999066
Query 2411862 GTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGAT 2411921
|||||||| || || | ||| || ||||||| || |||||||| | || | ||
Sbjct 19999067 ATCGGCAAACAGAATGGTTACCTCGCAGCCGGCCTTTAGGAAGTCGGCAATCTTCGACAT 19999126
Query 2411922 GGGCACAAAGTAGCCCAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAAT 2411975
|||||||||||| | | ||| ||||| ||||||| ||| || ||||| || ||
Sbjct 19999127 CGGCACAAAGTAGGCGACATGTGGCTTTCCCGTCGTCGCCGTTCCCCAGTAGAT 19999180
Score = 120 bits (132), Expect = 5e-21
Identities = 238/347 (69%), Gaps = 4/347 (1%)
Strand=Plus/Plus
Query 2019032 GGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGG 2019091
||| || || ||| ||||||||||||| ||| ||||||||| ||| | || | ||
Sbjct 23070011 GGGTCCTCCTGGCGTTGGCAAGACCACGACCATTCAGTGCCTGGCCCGCATCCTGCTCGG 23070070
Query 2019092 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGT 2019151
| | | | ||||| ||||| || || ||||| || ||||||| ||| | || ||
Sbjct 23070071 AGACAGCTACAAGGAGGCAGTGCTGGAGCTGAATGCCTCGAACGAGCGTGGCATCGATGT 23070130
Query 2019152 CGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGAC-CTGCCGCCCGGCCGCC 2019210
||||| | | |||||| || | ||| | ||| || || ||||| |
Sbjct 23070131 GGTGCGCAACAAGATCAAGATGTTTGCCCAGCAAAAGGT-GACGCTACCCAAGGGCCGTC 23070189
Query 2019211 ACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCC 2019270
||||| | | ||||| || ||||| ||| || | ||| || ||||||||||| || |
Sbjct 23070190 ACAAGATCGTTATCCTGGACGAGGCGGACAGCATGACGGAGGGCGCCCAGCAGGCGCTGC 23070249
Query 2019271 GATCG-ACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCG 2019329
| ||| |||||||| | |||| ||||||||| || || || ||||||||||||||
Sbjct 23070250 G-TCGCACCATGGAGATCTACAGCAACACGACTCGCTTCGCCCTGGCCTGCAACACCAGC 23070308
Query 2019330 TCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTT 2019376
|| | ||||||| | | || || |||||||| |||||||
Sbjct 23070309 GAGAAGATCATCGAGCCGATACAATCGCGCTGCGCCATGCTGCGCTT 23070355
>seq3
Length=33007066
Score = 122 bits (134), Expect = 1e-21
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 2035561 AGGACGACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACC 2035620
||||| | |||||||||||||||||| |||||||| | || | |||| ||||
Sbjct 27415405 AGGACAAGAAGCGCACCGACGACATTATCCCGTGGGATGCCGAATTCCTCAAGGTAGACC 27415464
Query 2035621 AACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCG 2035680
| ||| ||||| ||| | || || |||||||| || || || |||||| | | ||
Sbjct 27415465 AGGGCACACTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATATCAAGGGTTTGCACG 27415524
Query 2035681 ATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCA 2035740
| || ||||||||||||||||| | || | ||||||| | || ||||| || ||||
Sbjct 27415525 AGGTGTCTTGCAAGACCGTGGCCAATATGATGATGGGCAAGACTCCAGAGGAAATACGCA 27415584
Query 2035741 AGACCTTTAACATCAAG 2035757
|||| || |||||||||
Sbjct 27415585 AGACTTTCAACATCAAG 27415601
Score = 118 bits (130), Expect = 2e-20
Identities = 172/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| || |||||| ||||||| || || |||
Sbjct 15154773 TGTACTTGGTGACAGCCTTGGTTCCCTCACTAACAGCGTGCTTGGCCAGCTCTCCCGGCA 15154832
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||||||||| || || ||||| || || || ||| || |||||||||
Sbjct 15154833 GCAGCAGGCGCACAGCCGTTTGGATTTCCCGACTGGTGATGGTTGAGCGCTTGTTGTAAT 15154892
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| |||| ||| ||||||| | ||||| |||| ||||| || ||||| |||||
Sbjct 15154893 GAGCCAAGCGAGACGCCTCGGCAGCAATGCGCTCGAAGATGTCATTTACAAAGCTGTTCA 15154952
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||||| ||| || || || ||| || || || ||||| || || ||||
Sbjct 15154953 TGATGCTCATCGCTTTCGACGAAATACCAGTGTCAGGATGGACTTGCTTCAGAACTTTGT 15155012
Query 1485710 AAA 1485712
|||
Sbjct 15155013 AAA 15155015
Score = 107 bits (118), Expect = 3e-17
Identities = 137/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 2035569 AAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCCACC 2035628
|||||||||||||| ||| |||||||| | || | |||| ||||| |||
Sbjct 27409719 AAGCGCACCGACGAAATTATCCCGTGGGATGCCGAATTCCTCAAGGTAGACCAGGGCACA 27409778
Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688
||||| ||| | || || |||||||| || || || ||||| | |||| ||
Sbjct 27409779 CTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATGTCAAGGGTTTGCTCGCGGTGTCT 27409838
Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748
||||||||||||||||| | || | ||||||| | || ||||| || |||||||| ||
Sbjct 27409839 TGCAAGACCGTGGCCAATATGATGATGGGCAAGACTCCAGAGGAAATACGCAAGACTTTC 27409898
Query 2035749 AACATCAAG 2035757
|||||||||
Sbjct 27409899 AACATCAAG 27409907
Score = 98.7 bits (108), Expect = 2e-14
Identities = 135/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 2035569 AAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCCACC 2035628
|||||||||||||||||| |||||||| | || | |||| |||| ||
Sbjct 27408209 AAGCGCACCGACGACATTATCCCGTGGGATGCCGAATTCCTCAAGGTAGACCTGGGCATA 27408268
Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688
||||| ||| | || || |||||||| || || || |||||| | ||| | ||
Sbjct 27408269 CTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATATCAAGGGTTTGCTCAAAGTGTCT 27408328
Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748
||||||||||||||||| | || ||||| || || ||||| || |||||||| ||
Sbjct 27408329 TGCAAGACCGTGGCCAATATGATTAAGGGTAAAAGTCCAGAGGAAATACGCAAGACTTTC 27408388
Query 2035749 AACATCAAG 2035757
|||||||||
Sbjct 27408389 AACATCAAG 27408397
Score = 93.3 bits (102), Expect = 7e-13
Identities = 134/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 2035569 AAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCCACC 2035628
|||||||||||||||||| |||||||| | || | |||| |||| ||
Sbjct 27411701 AAGCGCACCGACGACATTATCCCGTGGGATGCCGAATTCCTCAAGGTAGACCTGGGCATA 27411760
Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688
||||| ||| | || || |||||||| || || || |||||| | ||||| ||
Sbjct 27411761 CTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATATCAAGGGTTTGCTCGAGGTGTCT 27411820
Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748
|||| | |||||||||| | || ||||| || || ||||| || |||||||| ||
Sbjct 27411821 TGCACGCCCGTGGCCAATATGATTAAGGGTAAAAGTCCAGAGGAAATACGCAAGACTTTC 27411880
Query 2035749 AACATCAAG 2035757
|||||||||
Sbjct 27411881 AACATCAAG 27411889
>seq4
Length=20862834
Score = 113 bits (124), Expect = 7e-19
Identities = 225/330 (68%), Gaps = 9/330 (3%)
Strand=Plus/Plus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||||||||| || ||||| |||||| ||| || ||||||||||| || |||||
Sbjct 15862759 ACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 15862818
Query 794400 CTTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456
||| ||||||||||| |||| || ||||| || ||||| || || ||||| ||
Sbjct 15862819 CTTCAGCCAAAAGATCGAGGCA---AAGCTGCCGCTAAAGAAGATTCCTTCCACGGCCGC 15862875
Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516
|||| | | | ||||||||||| || || | || | | ||||| ||| ||
Sbjct 15862876 AAAGGCAATAATACGCTCGGCAAAGTTGGCC--GATTTCGAGGAT-ATCCAGGACATGGC 15862932
Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576
||| || ||||| | | || | |||| || || || || || | || |||
Sbjct 15862933 CCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAACAAGTAGTCGCG 15862992
Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636
||| ||| ||| | ||||||||| ||||| | ||| |||| ||||| | ||
Sbjct 15862993 CTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCGGAGTGCACATT 15863052
Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
|| ||||| ||||||||||| || |||||
Sbjct 15863053 CTCCATGGCTATCTGGAAGCCGTAGAAGCA 15863082
>seq1
Length=22123056
Score = 102 bits (112), Expect = 1e-15
Identities = 167/241 (69%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||| |||||||||||||| ||||| |||||||||| ||||||| || || |||
Sbjct 464487 TGTACTTCGTGACGGCCTTGGTTCCCTCACTGACGGCGTGCTTGGCCAGCTCTCCCGGCA 464546
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| || ||||| || || ||||| || || | ||| |||| ||||| |
Sbjct 464547 GAAGTAGCCGCACAGCCGTTTGGATTTCCCGACTTGTGATGGTGTACTTTTTGTTGTAGT 464606
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| ||| || ||| || | | | ||||| |||| || ||||| ||||| |||||
Sbjct 464607 GACCCAAACGAGAGGCTTCCGAGGCAATGCGCTCGAAGATATCGTTTACAAAGCTGTTCA 464666
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||||| ||| ||||| || ||| ||||| || ||||| || || || |
Sbjct 464667 TGATGCTCATCGCCTTGGAGGAGACACCAGTGTCCGGGTGGACTTGCTTAAGAACTTTCT 464726
Query 1485710 A 1485710
|
Sbjct 464727 A 464727
Score = 102 bits (112), Expect = 1e-15
Identities = 167/241 (69%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||| |||||||||||||| ||||| |||||||||| ||||||| || || |||
Sbjct 14009803 TGTACTTCGTGACGGCCTTGGTTCCCTCACTGACGGCGTGCTTGGCCAGCTCTCCCGGCA 14009744
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| || ||||| || || ||||| || || | ||| ||| ||||| |
Sbjct 14009743 GAAGTAGCCGCACAGCCGTTTGGATTTCCCGACTTGTGATGGTGGACTTTTTGTTGTAGT 14009684
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| ||| || ||| || | | | ||||| |||| || ||||| ||||| |||||
Sbjct 14009683 GACCCAAACGAGAGGCTTCCGAGGCAATGCGCTCGAAGATATCGTTTACAAAGCTGTTCA 14009624
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||||| ||| ||||| || ||| ||||| || ||||| || || ||||
Sbjct 14009623 TGATGCTCATCGCCTTGGAGGAGACACCAGTGTCCGGGTGGACTTGCTTCAGAACTTTGT 14009564
Query 1485710 A 1485710
|
Sbjct 14009563 A 14009563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916245761752634
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