Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2 127 3e-23 seq3 122 1e-21 seq4 113 7e-19 seq1 102 1e-15 >seq2 Length=30136903 Score = 127 bits (140), Expect = 3e-23 Identities = 317/474 (67%), Gaps = 8/474 (2%) Strand=Plus/Plus Query 2411506 AAGGCAAAGATCTTGCGCTGGTCG-CGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTG 2411564 |||| |||||||||||||| ||| ||||| |||||||||||||| || | |||| | Sbjct 19998711 AAGGTGAAGATCTTGCGCTGATCGACGCCC-CCAAACTGGGCGTCCACCTTCAGGTATTC 19998769 Query 2411565 CTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTGCGGTCCAT 2411624 |||||| |||||||||| || |||| ||| |||| |||| | || Sbjct 19998770 CTCGTCCAGGGCCTGCAGTCCTGGATAGAGCAGGCCCGAGAGCAGCGGATACTCTACCTG 19998829 Query 2411625 CTTGACCACCTGGGCGGCGGCCTTTTGCGC--CGTGCCGACGGTCACGCGCGCCGTCAGG 2411682 || || |||| |||| | ||||| | || ||||| | || || || | || Sbjct 19998830 TTTAACGACCTCGGCGCCCGCCTTCTTGGCATCGTGCTGC--GTGACCACCGAGGATAGC 19998887 Query 2411683 CGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAAATTCG 2411742 | | ||| || ||||| | | ||||||| |||||||| ||||| | Sbjct 19998888 TTGTACACGTCCAGAGTGTACTCCTTGGACAGCTGGTAGTCGCTGCCCTTGACAAACTTC 19998947 Query 2411743 AGACGATCCAGCGGGACGCCAATGT-GCTGGAGCATGGCCTTGATGGCAAACTCGTACCA 2411801 || |||||||| ||||| ||| ||| |||||||||||||| | |||||| | Sbjct 19998948 AGCTTCTCCAGCGGAACGCCGATGGAGCTC-AGCATGGCCTTGATCACCTGCTCGTAGTA 19999006 Query 2411802 GCGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCAC 2411861 || || |||| | || ||| |||| || ||||| || | |||||| | Sbjct 19999007 CTGGGTGCGCAGCTCCAGCAGCGACCAGGGCGCTTTCATGTTGTCCAGATAGGCGTGGAG 19999066 Query 2411862 GTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGAT 2411921 |||||||| || || | ||| || ||||||| || |||||||| | || | || Sbjct 19999067 ATCGGCAAACAGAATGGTTACCTCGCAGCCGGCCTTTAGGAAGTCGGCAATCTTCGACAT 19999126 Query 2411922 GGGCACAAAGTAGCCCAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAAT 2411975 |||||||||||| | | ||| ||||| ||||||| ||| || ||||| || || Sbjct 19999127 CGGCACAAAGTAGGCGACATGTGGCTTTCCCGTCGTCGCCGTTCCCCAGTAGAT 19999180 Score = 120 bits (132), Expect = 5e-21 Identities = 238/347 (69%), Gaps = 4/347 (1%) Strand=Plus/Plus Query 2019032 GGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGG 2019091 ||| || || ||| ||||||||||||| ||| ||||||||| ||| | || | || Sbjct 23070011 GGGTCCTCCTGGCGTTGGCAAGACCACGACCATTCAGTGCCTGGCCCGCATCCTGCTCGG 23070070 Query 2019092 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGT 2019151 | | | | ||||| ||||| || || ||||| || ||||||| ||| | || || Sbjct 23070071 AGACAGCTACAAGGAGGCAGTGCTGGAGCTGAATGCCTCGAACGAGCGTGGCATCGATGT 23070130 Query 2019152 CGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGAC-CTGCCGCCCGGCCGCC 2019210 ||||| | | |||||| || | ||| | ||| || || ||||| | Sbjct 23070131 GGTGCGCAACAAGATCAAGATGTTTGCCCAGCAAAAGGT-GACGCTACCCAAGGGCCGTC 23070189 Query 2019211 ACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCC 2019270 ||||| | | ||||| || ||||| ||| || | ||| || ||||||||||| || | Sbjct 23070190 ACAAGATCGTTATCCTGGACGAGGCGGACAGCATGACGGAGGGCGCCCAGCAGGCGCTGC 23070249 Query 2019271 GATCG-ACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCG 2019329 | ||| |||||||| | |||| ||||||||| || || || |||||||||||||| Sbjct 23070250 G-TCGCACCATGGAGATCTACAGCAACACGACTCGCTTCGCCCTGGCCTGCAACACCAGC 23070308 Query 2019330 TCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTT 2019376 || | ||||||| | | || || |||||||| ||||||| Sbjct 23070309 GAGAAGATCATCGAGCCGATACAATCGCGCTGCGCCATGCTGCGCTT 23070355 >seq3 Length=33007066 Score = 122 bits (134), Expect = 1e-21 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 2035561 AGGACGACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACC 2035620 ||||| | |||||||||||||||||| |||||||| | || | |||| |||| Sbjct 27415405 AGGACAAGAAGCGCACCGACGACATTATCCCGTGGGATGCCGAATTCCTCAAGGTAGACC 27415464 Query 2035621 AACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCG 2035680 | ||| ||||| ||| | || || |||||||| || || || |||||| | | || Sbjct 27415465 AGGGCACACTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATATCAAGGGTTTGCACG 27415524 Query 2035681 ATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCA 2035740 | || ||||||||||||||||| | || | ||||||| | || ||||| || |||| Sbjct 27415525 AGGTGTCTTGCAAGACCGTGGCCAATATGATGATGGGCAAGACTCCAGAGGAAATACGCA 27415584 Query 2035741 AGACCTTTAACATCAAG 2035757 |||| || ||||||||| Sbjct 27415585 AGACTTTCAACATCAAG 27415601 Score = 118 bits (130), Expect = 2e-20 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || |||||| ||||||| || || ||| Sbjct 15154773 TGTACTTGGTGACAGCCTTGGTTCCCTCACTAACAGCGTGCTTGGCCAGCTCTCCCGGCA 15154832 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| || || ||||| || || || ||| || ||||||||| Sbjct 15154833 GCAGCAGGCGCACAGCCGTTTGGATTTCCCGACTGGTGATGGTTGAGCGCTTGTTGTAAT 15154892 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| ||||||| | ||||| |||| ||||| || ||||| ||||| Sbjct 15154893 GAGCCAAGCGAGACGCCTCGGCAGCAATGCGCTCGAAGATGTCATTTACAAAGCTGTTCA 15154952 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| ||| || || || ||| || || || ||||| || || |||| Sbjct 15154953 TGATGCTCATCGCTTTCGACGAAATACCAGTGTCAGGATGGACTTGCTTCAGAACTTTGT 15155012 Query 1485710 AAA 1485712 ||| Sbjct 15155013 AAA 15155015 Score = 107 bits (118), Expect = 3e-17 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 2035569 AAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCCACC 2035628 |||||||||||||| ||| |||||||| | || | |||| ||||| ||| Sbjct 27409719 AAGCGCACCGACGAAATTATCCCGTGGGATGCCGAATTCCTCAAGGTAGACCAGGGCACA 27409778 Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 ||||| ||| | || || |||||||| || || || ||||| | |||| || Sbjct 27409779 CTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATGTCAAGGGTTTGCTCGCGGTGTCT 27409838 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 ||||||||||||||||| | || | ||||||| | || ||||| || |||||||| || Sbjct 27409839 TGCAAGACCGTGGCCAATATGATGATGGGCAAGACTCCAGAGGAAATACGCAAGACTTTC 27409898 Query 2035749 AACATCAAG 2035757 ||||||||| Sbjct 27409899 AACATCAAG 27409907 Score = 98.7 bits (108), Expect = 2e-14 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 2035569 AAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCCACC 2035628 |||||||||||||||||| |||||||| | || | |||| |||| || Sbjct 27408209 AAGCGCACCGACGACATTATCCCGTGGGATGCCGAATTCCTCAAGGTAGACCTGGGCATA 27408268 Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 ||||| ||| | || || |||||||| || || || |||||| | ||| | || Sbjct 27408269 CTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATATCAAGGGTTTGCTCAAAGTGTCT 27408328 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 ||||||||||||||||| | || ||||| || || ||||| || |||||||| || Sbjct 27408329 TGCAAGACCGTGGCCAATATGATTAAGGGTAAAAGTCCAGAGGAAATACGCAAGACTTTC 27408388 Query 2035749 AACATCAAG 2035757 ||||||||| Sbjct 27408389 AACATCAAG 27408397 Score = 93.3 bits (102), Expect = 7e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 2035569 AAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCCACC 2035628 |||||||||||||||||| |||||||| | || | |||| |||| || Sbjct 27411701 AAGCGCACCGACGACATTATCCCGTGGGATGCCGAATTCCTCAAGGTAGACCTGGGCATA 27411760 Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 ||||| ||| | || || |||||||| || || || |||||| | ||||| || Sbjct 27411761 CTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATATCAAGGGTTTGCTCGAGGTGTCT 27411820 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 |||| | |||||||||| | || ||||| || || ||||| || |||||||| || Sbjct 27411821 TGCACGCCCGTGGCCAATATGATTAAGGGTAAAAGTCCAGAGGAAATACGCAAGACTTTC 27411880 Query 2035749 AACATCAAG 2035757 ||||||||| Sbjct 27411881 AACATCAAG 27411889 >seq4 Length=20862834 Score = 113 bits (124), Expect = 7e-19 Identities = 225/330 (68%), Gaps = 9/330 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||||||||| || ||||| |||||| ||| || ||||||||||| || ||||| Sbjct 15862759 ACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 15862818 Query 794400 CTTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||| ||||||||||| |||| || ||||| || ||||| || || ||||| || Sbjct 15862819 CTTCAGCCAAAAGATCGAGGCA---AAGCTGCCGCTAAAGAAGATTCCTTCCACGGCCGC 15862875 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 |||| | | | ||||||||||| || || | || | | ||||| ||| || Sbjct 15862876 AAAGGCAATAATACGCTCGGCAAAGTTGGCC--GATTTCGAGGAT-ATCCAGGACATGGC 15862932 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 ||| || ||||| | | || | |||| || || || || || | || ||| Sbjct 15862933 CCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAACAAGTAGTCGCG 15862992 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 ||| ||| ||| | ||||||||| ||||| | ||| |||| ||||| | || Sbjct 15862993 CTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCGGAGTGCACATT 15863052 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || ||||| ||||||||||| || ||||| Sbjct 15863053 CTCCATGGCTATCTGGAAGCCGTAGAAGCA 15863082 >seq1 Length=22123056 Score = 102 bits (112), Expect = 1e-15 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| |||||||||||||| ||||| |||||||||| ||||||| || || ||| Sbjct 464487 TGTACTTCGTGACGGCCTTGGTTCCCTCACTGACGGCGTGCTTGGCCAGCTCTCCCGGCA 464546 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| || || ||||| || || | ||| |||| ||||| | Sbjct 464547 GAAGTAGCCGCACAGCCGTTTGGATTTCCCGACTTGTGATGGTGTACTTTTTGTTGTAGT 464606 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||| || ||| || | | | ||||| |||| || ||||| ||||| ||||| Sbjct 464607 GACCCAAACGAGAGGCTTCCGAGGCAATGCGCTCGAAGATATCGTTTACAAAGCTGTTCA 464666 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| ||| ||||| || ||| ||||| || ||||| || || || | Sbjct 464667 TGATGCTCATCGCCTTGGAGGAGACACCAGTGTCCGGGTGGACTTGCTTAAGAACTTTCT 464726 Query 1485710 A 1485710 | Sbjct 464727 A 464727 Score = 102 bits (112), Expect = 1e-15 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| |||||||||||||| ||||| |||||||||| ||||||| || || ||| Sbjct 14009803 TGTACTTCGTGACGGCCTTGGTTCCCTCACTGACGGCGTGCTTGGCCAGCTCTCCCGGCA 14009744 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| || || ||||| || || | ||| ||| ||||| | Sbjct 14009743 GAAGTAGCCGCACAGCCGTTTGGATTTCCCGACTTGTGATGGTGGACTTTTTGTTGTAGT 14009684 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||| || ||| || | | | ||||| |||| || ||||| ||||| ||||| Sbjct 14009683 GACCCAAACGAGAGGCTTCCGAGGCAATGCGCTCGAAGATATCGTTTACAAAGCTGTTCA 14009624 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| ||| ||||| || ||| ||||| || ||||| || || |||| Sbjct 14009623 TGATGCTCATCGCCTTGGAGGAGACACCAGTGTCCGGGTGGACTTGCTTCAGAACTTTGT 14009564 Query 1485710 A 1485710 | Sbjct 14009563 A 14009563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916245761752634