Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq5 87.8 1e-12
seq1 84.2 2e-11
>seq5
Length=28826359
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
||||||||||| || || |||||| | || ||||| ||||| ||| | || ||| |
Sbjct 28457682 AAAATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCC 28457623
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
|| || ||| | || || ||||| || || || ||| | ||| |||
Sbjct 28457622 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 28457563
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
|||||| | || || | || ||||| ||||||||||| | | || || | ||||||
Sbjct 28457562 CAGCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 28457503
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||||| || |||||||| || ||||| |||||
Sbjct 28457502 AACATCCAGAAGGAGTCGACCCTGCACTTGGTG 28457470
>seq1
Length=22123056
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|||||||| ||||| || ||||| | || ||||| ||||| ||| |||| ||| |
Sbjct 6630352 AAAATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCC 6630411
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
|| || ||| | || || ||||| || || || ||| | ||| |||
Sbjct 6630412 TCGGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 6630471
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
|||||| | | || | || || || ||||||||||||| || || | ||||||
Sbjct 6630472 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTAC 6630531
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
||||| || |||||||| || |||||| |||| |||
Sbjct 6630532 AACATCCAGAAGGAGTCCACTTTGCACTTGGTATTG 6630567
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398876770832134
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |