Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3 176 3e-38 >seq3 Length=33007066 Score = 176 bits (194), Expect = 3e-38 Identities = 563/869 (65%), Gaps = 12/869 (1%) Strand=Plus/Plus Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 |||| | || ||||||| ||| |||| ||||| | | || || || || || || | Sbjct 2875320 AATCGGTACCCTCGAACAGAGAGTCAATCTCAATGCTGGCCTGGGTGGACGACGAGAGGG 2875379 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA----AGGCTT-TTGCTGATTG 282132 ||| || || || || || || || | || | || | | |||| |||||| | Sbjct 2875380 TACGCTTTGCGCGCTCGCAGGCGGTGCGCAGACGACGAAGAGCACGCTTGTTGCTGGT-- 2875437 Query 282133 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT 282192 || || | || | || | |||||| || | ||| | || || ||||| || Sbjct 2875438 ---CAGGTCCTTCTTGTGCTTGCGCTTGAACTCCTGCACAAAGTGGGTCACTAGACGGTT 2875494 Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 || ||||| ||||| || | | |||| || | ||||| | | || | ||| | || Sbjct 2875495 GTCGAAATCCTCACCACCAAGATGGGTATCACCGGCCGTAGATTTGACCTCGAAGATGCC 2875554 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 || || | |||| || | ||||| ||| || ||||||| ||| |||||||| || Sbjct 2875555 GTCATCGATCGACAGAATGGACACATCGAAGGTACCGCCACCCAGATCGAAAATAAGCAC 2875614 Query 282313 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372 || || | || || || || ||||| || | |||||| || || || || Sbjct 2875615 GTTGCGCTCACCAACAGCCTTCTTGTCCAGGCCATAGGCGATAGCAGCGGCCGTGGGCTC 2875674 Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432 || || || | || ||||| | || ||||| | || ||||| || || || || | Sbjct 2875675 GTTGATGATACGCAGCACATTCAATCCGGCAATGGTACCGGCATCCTTGGTCGCCTGACG 2875734 Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAAT 282492 || || ||||| || || || || ||||| || ||||||| | ||| || || | Sbjct 2875735 CTGAGAGTCGTTGAAGTAGGCTGGCACAGTGATGACGGCATTCGACACTGTCTTGCCCAG 2875794 Query 282493 ATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGA 282552 || || || || | |||||||| | || | ||| || || || | || || || Sbjct 2875795 GTACGCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGAGGAGATCTCCTCGGG-GA 2875853 Query 282553 ATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 282611 | | | ||| |||| | || | || |||| | || || | | ||| | | Sbjct 2875854 AGAAGGTCTTCTTCTCATCCTTGTACGTAACCTCAATCTTGGGCTTGCCATCTACACTGA 2875913 Query 282612 TAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 282671 || | || ||||| | ||||| || || || ||| || | ||| | | || Sbjct 2875914 CCACATCGAAGGGCCAGTGCTTCATGTCAGACTGCACAGCAGAATCCTCAAACTTGCGAC 2875973 Query 282672 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGG 282731 |||| | || || ||||| || || || | |||||| || | || | |||| |||| Sbjct 2875974 CAATCAGACGCTTGGCATCGAAGATCGTTTGGGTTGGGTTCATCGCCACCTGATTCTTGG 2876033 Query 282732 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 282791 | ||||| ||||||| | | || || || || || | |||||| ||||| || || |||| Sbjct 2876034 CGGCATCACCAATCAAACGCTCCGTGTCCGTGAAGGCAACATAGGATGGTGTCGTACGAT 2876093 Query 282792 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAA 282851 |||| || || || ||||| || || || || |||| || | ||||| |||||| Sbjct 2876094 TACCCTGGTCGTTGGCAATGATCTCGACCTTGCCATGCTGGAACACACCCACACAAGAGT 2876153 Query 282852 AAGTTGTTCCTAAATCAATACCAATAGCA 282880 | ||||| || ||||||||||||| |||| Sbjct 2876154 AGGTTGTGCCCAAATCAATACCAACAGCA 2876182 Score = 107 bits (118), Expect = 1e-17 Identities = 447/703 (64%), Gaps = 2/703 (0%) Strand=Plus/Minus Query 282179 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 282238 || || ||||| || || ||||| |||| || | | |||| || | ||||| | | Sbjct 3146160 GTCACTAGACGGTTGTCGAAATCCGCACCACCAAGATGGGTATCACCGGCCGTAGATTTG 3146101 Query 282239 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298 || | ||| | ||||| | | || | || | ||||| ||| || ||||||| | Sbjct 3146100 ACCTTGAAGATGCCATCATTGATCGAAAGAATGGACACATCGAAGGTACCGCCACCCAGA 3146041 Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 282358 || |||||||| || || | | || || || || ||||| || | |||| Sbjct 3146040 TCGAAAATAAGCACGTTGCGCTTACCAACAGCCTTCTTGTCCAGGCCATAGGCGATAGCA 3145981 Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418 || || || || || || || || | || ||||| | ||| || || | || ||||| Sbjct 3145980 GCGGCCGTGGGCTCGTTGATGATACGCAGCACATTCAAACCGGCGATGGTACCGGCATCC 3145921 Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478 || || || || | || || ||||| || | || || |||| || || |||| || Sbjct 3145920 TTGGTAGCCTGACGCTGCGAGTCGTTGAAGTGGGCTGGCACAGAGATGACAGCATTGGTC 3145861 Query 282479 ACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAA 282538 || || || | || | || || | |||||||| | || | ||| | || Sbjct 3145860 ACCGTCTTGCCCAGGTACTCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGCAGAG 3145801 Query 282539 ATTTGTTCTGGAGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 282597 || | || || ||| | | ||| || | | || | || |||| | || || Sbjct 3145800 ATCTCCTC-GGCGAAGAAGGTCTTTTTCTCGTCCTTGTACGTAACCTCAATCTTAGGCTT 3145742 Query 282598 ATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTC 282657 | ||| | | || | || ||||| | ||||| || || || ||| || Sbjct 3145741 GCCGTCTACACTGACCACATCGAAGGGCCAGTGCTTCATGTCAGACTGCACAGCAGAATC 3145682 Query 282658 ATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGC 282717 ||||| | | |||||| | || || | ||| || || | | | ||| | || || Sbjct 3145681 CTTAAACTTGCGACCAATCAGACGCTTCGAATCGAAGATCCTGTGGTGTGGGTGTACCGC 3145622 Query 282718 AGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGA 282777 | || | ||||| ||||| ||||| | | || || || || || | |||||| || Sbjct 3145621 CACCTGGTTCTTGGCGGCATCACCAATTAAGCGCTCCGTGTCCGTGAAGGCAACATAGGA 3145562 Query 282778 TGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATAC 282837 || || || |||||||| || || || ||||| || || || || ||||| || | || Sbjct 3145561 TGATGTGGTACGATTACCATGGTCGTTGGCAATGATCTCGACCTTGCCATTCTGGAACAC 3145502 Query 282838 ACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 ||| ||||| | |||||| || |||||||||||||||||| Sbjct 3145501 ACCCACACAGCAGTGAGTTGTGCCCAAATCAATACCAATAGCA 3145459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740630105425356