Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq3 176 3e-38
>seq3
Length=33007066
Score = 176 bits (194), Expect = 3e-38
Identities = 563/869 (65%), Gaps = 12/869 (1%)
Strand=Plus/Plus
Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077
|||| | || ||||||| ||| |||| ||||| | | || || || || || || |
Sbjct 2875320 AATCGGTACCCTCGAACAGAGAGTCAATCTCAATGCTGGCCTGGGTGGACGACGAGAGGG 2875379
Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA----AGGCTT-TTGCTGATTG 282132
||| || || || || || || || | || | || | | |||| |||||| |
Sbjct 2875380 TACGCTTTGCGCGCTCGCAGGCGGTGCGCAGACGACGAAGAGCACGCTTGTTGCTGGT-- 2875437
Query 282133 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT 282192
|| || | || | || | |||||| || | ||| | || || ||||| ||
Sbjct 2875438 ---CAGGTCCTTCTTGTGCTTGCGCTTGAACTCCTGCACAAAGTGGGTCACTAGACGGTT 2875494
Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252
|| ||||| ||||| || | | |||| || | ||||| | | || | ||| | ||
Sbjct 2875495 GTCGAAATCCTCACCACCAAGATGGGTATCACCGGCCGTAGATTTGACCTCGAAGATGCC 2875554
Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312
|| || | |||| || | ||||| ||| || ||||||| ||| |||||||| ||
Sbjct 2875555 GTCATCGATCGACAGAATGGACACATCGAAGGTACCGCCACCCAGATCGAAAATAAGCAC 2875614
Query 282313 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372
|| || | || || || || ||||| || | |||||| || || || ||
Sbjct 2875615 GTTGCGCTCACCAACAGCCTTCTTGTCCAGGCCATAGGCGATAGCAGCGGCCGTGGGCTC 2875674
Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432
|| || || | || ||||| | || ||||| | || ||||| || || || || |
Sbjct 2875675 GTTGATGATACGCAGCACATTCAATCCGGCAATGGTACCGGCATCCTTGGTCGCCTGACG 2875734
Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAAT 282492
|| || ||||| || || || || ||||| || ||||||| | ||| || || |
Sbjct 2875735 CTGAGAGTCGTTGAAGTAGGCTGGCACAGTGATGACGGCATTCGACACTGTCTTGCCCAG 2875794
Query 282493 ATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGA 282552
|| || || || | |||||||| | || | ||| || || || | || || ||
Sbjct 2875795 GTACGCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGAGGAGATCTCCTCGGG-GA 2875853
Query 282553 ATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 282611
| | | ||| |||| | || | || |||| | || || | | ||| | |
Sbjct 2875854 AGAAGGTCTTCTTCTCATCCTTGTACGTAACCTCAATCTTGGGCTTGCCATCTACACTGA 2875913
Query 282612 TAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 282671
|| | || ||||| | ||||| || || || ||| || | ||| | | ||
Sbjct 2875914 CCACATCGAAGGGCCAGTGCTTCATGTCAGACTGCACAGCAGAATCCTCAAACTTGCGAC 2875973
Query 282672 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGG 282731
|||| | || || ||||| || || || | |||||| || | || | |||| ||||
Sbjct 2875974 CAATCAGACGCTTGGCATCGAAGATCGTTTGGGTTGGGTTCATCGCCACCTGATTCTTGG 2876033
Query 282732 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 282791
| ||||| ||||||| | | || || || || || | |||||| ||||| || || ||||
Sbjct 2876034 CGGCATCACCAATCAAACGCTCCGTGTCCGTGAAGGCAACATAGGATGGTGTCGTACGAT 2876093
Query 282792 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAA 282851
|||| || || || ||||| || || || || |||| || | ||||| ||||||
Sbjct 2876094 TACCCTGGTCGTTGGCAATGATCTCGACCTTGCCATGCTGGAACACACCCACACAAGAGT 2876153
Query 282852 AAGTTGTTCCTAAATCAATACCAATAGCA 282880
| ||||| || ||||||||||||| ||||
Sbjct 2876154 AGGTTGTGCCCAAATCAATACCAACAGCA 2876182
Score = 107 bits (118), Expect = 1e-17
Identities = 447/703 (64%), Gaps = 2/703 (0%)
Strand=Plus/Minus
Query 282179 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 282238
|| || ||||| || || ||||| |||| || | | |||| || | ||||| | |
Sbjct 3146160 GTCACTAGACGGTTGTCGAAATCCGCACCACCAAGATGGGTATCACCGGCCGTAGATTTG 3146101
Query 282239 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298
|| | ||| | ||||| | | || | || | ||||| ||| || ||||||| |
Sbjct 3146100 ACCTTGAAGATGCCATCATTGATCGAAAGAATGGACACATCGAAGGTACCGCCACCCAGA 3146041
Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 282358
|| |||||||| || || | | || || || || ||||| || | ||||
Sbjct 3146040 TCGAAAATAAGCACGTTGCGCTTACCAACAGCCTTCTTGTCCAGGCCATAGGCGATAGCA 3145981
Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418
|| || || || || || || || | || ||||| | ||| || || | || |||||
Sbjct 3145980 GCGGCCGTGGGCTCGTTGATGATACGCAGCACATTCAAACCGGCGATGGTACCGGCATCC 3145921
Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478
|| || || || | || || ||||| || | || || |||| || || |||| ||
Sbjct 3145920 TTGGTAGCCTGACGCTGCGAGTCGTTGAAGTGGGCTGGCACAGAGATGACAGCATTGGTC 3145861
Query 282479 ACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAA 282538
|| || || | || | || || | |||||||| | || | ||| | ||
Sbjct 3145860 ACCGTCTTGCCCAGGTACTCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGCAGAG 3145801
Query 282539 ATTTGTTCTGGAGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 282597
|| | || || ||| | | ||| || | | || | || |||| | || ||
Sbjct 3145800 ATCTCCTC-GGCGAAGAAGGTCTTTTTCTCGTCCTTGTACGTAACCTCAATCTTAGGCTT 3145742
Query 282598 ATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTC 282657
| ||| | | || | || ||||| | ||||| || || || ||| ||
Sbjct 3145741 GCCGTCTACACTGACCACATCGAAGGGCCAGTGCTTCATGTCAGACTGCACAGCAGAATC 3145682
Query 282658 ATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGC 282717
||||| | | |||||| | || || | ||| || || | | | ||| | || ||
Sbjct 3145681 CTTAAACTTGCGACCAATCAGACGCTTCGAATCGAAGATCCTGTGGTGTGGGTGTACCGC 3145622
Query 282718 AGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGA 282777
| || | ||||| ||||| ||||| | | || || || || || | |||||| ||
Sbjct 3145621 CACCTGGTTCTTGGCGGCATCACCAATTAAGCGCTCCGTGTCCGTGAAGGCAACATAGGA 3145562
Query 282778 TGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATAC 282837
|| || || |||||||| || || || ||||| || || || || ||||| || | ||
Sbjct 3145561 TGATGTGGTACGATTACCATGGTCGTTGGCAATGATCTCGACCTTGCCATTCTGGAACAC 3145502
Query 282838 ACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880
||| ||||| | |||||| || ||||||||||||||||||
Sbjct 3145501 ACCCACACAGCAGTGAGTTGTGCCCAAATCAATACCAATAGCA 3145459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740630105425356
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |