Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq5 174 2e-38 >seq5 Length=28826359 Score = 174 bits (192), Expect = 2e-38 Identities = 945/1491 (63%), Gaps = 51/1491 (3%) Strand=Plus/Minus Query 150370 GACGGTAAATTGC--TGCGAATTGGCCGCCGGAAGTGTGCGAAAATAGTACATGCCGGTT 150427 ||| |||||||| |||| ||||| || || |||||| ||||||||||| |||||| Sbjct 15308256 GACAGTAAATTGTATTGCG--TTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCCGGTT 15308199 Query 150428 TTGAGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATTTTAGGCAAAGTAGGGTT- 150486 || || || ||||| | | | || | || | || ||| | ||| ||| | Sbjct 15308198 TTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTC-CGTAGTTGGGCTC 15308140 Query 150487 TGCCATGTACACGTTGAACGATTGACTTTGATCGATAAATGCTCCCCTGTCTGCTGCCAT 150546 ||| | || || || ||||| ||||||||||| |||||||| || || || || ||||| Sbjct 15308139 TGCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCAT 15308080 Query 150547 TTCAATCATATATTTTCCATTGTTCTCCCAAATTTCCCAGATTGTCATGTACAGCTTTTT 150606 || ||| | ||||| | || |||||||||| | || | || || | Sbjct 15308079 TTTAATTGTGGATTTTAC--TG-------AAATTTCCCATACAGTTTTATAAAGATCGCG 15308029 Query 150607 TAGATTGTCGGGAATTTTGGCGATAGAAGCTATCGATCCTCTGTTTGCCATGATTGTTTT 150666 | || | |||||| | | ||| || || || ||| | | || ||| | || Sbjct 15308028 AACCTTTTGGGGAATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAAATTATTTTATT 15307969 Query 150667 TCGCATACTAT--TTGTATAGAGATTTAATTTGATTAGATCATCGACCAAGTAGCGGTTG 150724 | ||| || | ||| || | | || ||| ||| | || | | ||| Sbjct 15307968 TTTCATCTCATCATCCCATA-AGTCCAACTCTG-TTAAATCCCTCAATAAATGATGATTG 15307911 Query 150725 ACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTGTGAAACGGTTCA 150784 || ||||||||||| || || || || |||||| | | | ||| || | | ||||| Sbjct 15307910 ACCACTTGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCG 15307851 Query 150785 AATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGC 150844 ||||| ||||| || | |||||||| || | || || ||||| ||| || | | Sbjct 15307850 AATGATTCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAAC 15307791 Query 150845 AATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAA-CTGTGACCAGTCCCATAA 150903 || ||||| | | ||||| |||| || | | ||||| || || ||| ||||||| Sbjct 15307790 AACGAATTCCTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTG-CCAATCCCATAG 15307732 Query 150904 CGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCTACC 150963 || || ||| ||||| ||| ||||| | ||||||| ||| | || || Sbjct 15307731 GTTCGTTGGAGTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGACTTCC 15307672 Query 150964 GGCAAACGTGCTATAAGGCTCACTAACAGAT---GCCAGTTCGTAACTGGCCTCGAGCGC 151020 || | || ||| || || || | | || ||||| |||| || || || || Sbjct 15307671 TTCATAGGTTTCATATGG---ACCAAATGCTTGAGCAAGTTCACAACTAGCTTCTAGAGC 15307615 Query 151021 AGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACGTA 151080 || ||| | |||||| ||||||| || || ||| |||| | ||||| | || Sbjct 15307614 TCCAAAATAAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATA 15307555 Query 151081 CGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGACG 151140 || | |||| | || || || || || | ||||||||| ||||| ||||| ||||| Sbjct 15307554 GGGAAAACGCATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACG 15307495 Query 151141 ATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTT 151200 ||| | | ||| || || || || | | |||||| | ||| || |||||||| Sbjct 15307494 ATGCCTTAAATTGGACTTCTTGGCTTCTGGCAAAGGGTAATAGTTGATGTCTATAATTTT 15307435 Query 151201 ATTCAAACTATTCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGTATC 151260 || | | | || | ||| |||| || | ||| || |||||| | || | Sbjct 15307434 GTTAAGATTTTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTT 15307375 Query 151261 AT-TATTGATAT--ATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTC 151317 | | || || | | || | || || || |||| ||| || || || | || || Sbjct 15307374 TTCTGCTGTTACGAACATGTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATC 15307315 Query 151318 GGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATT 151377 || || | || | || ||||| | ||| ||||| |||||||| || || ||| Sbjct 15307314 AGGTGCTGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATT 15307255 Query 151378 ACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTC 151437 ||||||||| || | ||||| | ||||| | | |||||| || | || ||||| Sbjct 15307254 TTGTTGATTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTC 15307195 Query 151438 GGCTTGAATTTCTATAATGTTTCGCATTAATGTAACCGCGGGCATT---TGCTCG---CG 151491 |||| |||||||||| | ||| | | |||| | || ||| || Sbjct 15307194 CACTTGCGATTCTATAATGGCAAACCATAAAG----CCTGGGCTTCCACTGTTCGATTCG 15307139 Query 151492 AAACTGGCCTTTATCCTCATAATGTTTGTACCAG---TATTCAAAGTCATCACCATACGT 151548 | | |||| | |||||| |||| || | |||||| | || || | Sbjct 15307138 CACGT--CCTTCTTGCTCATA---TTTGACATAGAGTTCTTCAAATTTTTCGCCCCAAAC 15307084 Query 151549 ATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAAC 151608 ||| | || |||||| | | |||||||| |||||||| | | ||| | ||||| Sbjct 15307083 ATCTTGAAGGCCAGGACATTTATGTGGACACATCAATGACCAGCTTTCATTTGCCTCAAC 15307024 Query 151609 GCGTTTCATAAATATATCCGGAACCCATAATGCGTTCATCAAATCACGCGCTTTGGTGTC 151668 |||||||| || | ||| |||| |||||| |||| | | |||||| ||| | | || Sbjct 15307023 ACGTTTCATGAAAAGATCAGGAATCCATAAAGCGTAAAAAAGATCACGTGCTCGGTTTTC 15306964 Query 151669 TTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTC 151728 ||| | ||| |||||| | || ||||| || | || || ||||||| || || Sbjct 15306963 TTCTTTTCCAGTGTTTCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTC 15306904 Query 151729 AACGTACACTGCTTGGGCGCCTTTTCGCTTGCCACCT---TGATCCACGTGACGCACCAT 151785 | || | || ||| || || || |||||| ||||| || | || ||| Sbjct 15306903 TAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGAGCCAC 15306844 Query 151786 ATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTTCGT 151836 |||||||||||||| | |||||| | | ||| | | || |||||||| Sbjct 15306843 ATTATTAAAAACTCTTAACATTGGAACTAATCCATTCGACGTACCGTTCGT 15306793 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 |||||||| | || || || || || ||||| ||||| || ||| | ||||| Sbjct 15755909 ACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCC 15755968 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | ||| || ||||| |||||| ||| || ||||| ||||| || ||||||||||| Sbjct 15755969 AATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGG 15756028 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || || ||| | | ||| | || || | ||||| || |||| ||| | |||||| Sbjct 15756029 ATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTTATGGTCTTG 15756088 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCATAGCTTA 137417 || || | || ||||| || || ||||| | ||| Sbjct 15756089 CCCGTTAGGGTCTTTACAAAGATCTGCATGGTTTA 15756123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488543963359200