Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq4 100 5e-16 >seq4 Length=20862834 Score = 100 bits (110), Expect = 5e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 183043 CAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATA 183102 ||| || || |||| || || ||||| | ||| | || ||||||||||| || || ||| Sbjct 9425821 CAGCTGGTGCGAGAGGGCAAGATGCACGGATTTCTTCGCATGTACTGGGCCAAGAAAATA 9425762 Query 183103 CTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTATAGTATCTATATGAACAATAAG 183162 || || ||||| || ||||| | || || || ||| ||||| | ||| Sbjct 9425761 CTCGAGTGGACGGCCACGCCGGAGCAGGCGCTGGAGTACGCGATCCTGCTGAACGACAAG 9425702 Query 183163 TACGAACTAGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGA 183222 ||| |||||||| ||||| || || || || || || |||||||| ||| | || Sbjct 9425701 TACAGCCTAGACGGGCGCGATCCCAATGGCTATGTGGGCTGCATGTGGTCCATTGGGGGC 9425642 Query 183223 TTACACGATAGAGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATATATGAATTAT 183282 ||||||||| | ||||| || || | ||||| |||||||| | || ||||| ||| Sbjct 9425641 ATACACGATATGGGCTGGAAGGAGCGAGCGATATTCGGAAAGATTCGCTACATGAACTAT 9425582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903411132244160