Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2 145 7e-30 seq4 141 9e-29 seq1 141 9e-29 seq5 102 8e-17 >seq2 Length=30136903 Score = 145 bits (160), Expect = 7e-30 Identities = 158/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| || ||||| || | ||| | | | ||||| || Sbjct 19092345 AAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCA-TCCTCCAG 19092403 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | ||||| ||||||||||| || ||||| || |||||||| ||| Sbjct 19092404 CTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGAT 19092463 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| ||||||| |||||||| || | ||||| |||||| || Sbjct 19092464 CTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCC 19092523 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||| || ||||| |||||||| Sbjct 19092524 GGTCAGAGTCTTCACGAATATCTGCAT 19092550 Score = 132 bits (146), Expect = 5e-26 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| || ||||| || | ||| | | | ||||| || Sbjct 19092573 AAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCA-TCCTCCAG 19092631 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | ||||| ||||||||||| || ||||| || |||||||| ||| Sbjct 19092632 CTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGAT 19092691 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| ||||||| |||||||| || | ||||| |||||| || Sbjct 19092692 CTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCC 19092751 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||| || || |||||||| Sbjct 19092752 AGTCAAGGTTTTCACAAAGATCTGCAT 19092778 Score = 129 bits (142), Expect = 6e-25 Identities = 234/338 (69%), Gaps = 7/338 (2%) Strand=Plus/Plus Query 116467 GGCCTGCACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCC 116526 || |||||||| ||||| ||||||||||| || |||| || ||||||||||| || || Sbjct 15750014 GGACTGCACGGATTCCATGTGCACGAGTTCGGGGACAACACCAACGGCTGCATGTCGTCC 15750073 Query 116527 GGCGAACACTTCAACCCCACCGG--CCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTC 116584 ||| ||||| ||||| |||| | |||| ||||| || |||| || | || | Sbjct 15750074 GGCCCCCACTTTAACCC--CCGGAACAAGGAGCACGGTGCCCCCACCGATGAGAACCGCC 15750131 Query 116585 ACGTCGGTGACCTGGGCAACATTGAGGCCAAAGTGTCCAACGCGCTCACTGCCGTGGACA 116644 || | || ||| |||||||||| |||| | || || | ||| ||||| || Sbjct 15750132 ACTTGGGCGACTTGGGCAACATCCAGGCGGCCG-GT--GACAGCCCCACGGCCGTCAGCA 15750188 Query 116645 AGATCGACAACGTGATGACGCTGTTCGGCGAGTACAGCGTGCTCGGTCGCAGTCTCGTCG 116704 | |||| ||| ||||||||||| | ||||| | | || |||| | |||| Sbjct 15750189 TCACCGACTCGAAGATCACGCTGTTCGGTGCCGACAGCATCATAGGACGCACCGTGGTCG 15750248 Query 116705 TGCACACCAACGCCGACGACCTGGGACTGGGCCAGCACCCGCTTAGCAAAACCACCGGCA 116764 | ||| || |||| || ||| |||| ||| ||| ||| ||||| |||||||||| Sbjct 15750249 TCCACGCCGACGCTGATGACTTGGGCAAGGGTGGTCACGAGCTAAGCAAGACCACCGGCA 15750308 Query 116765 ACTCGGGCGGCCGCCTCGGCTGCGGCATTATCGGCATT 116802 | | |||| ||| | |||||||| | || |||||| Sbjct 15750309 ATGCCGGCGCCCGTATTGGCTGCGGTGTCATTGGCATT 15750346 >seq4 Length=20862834 Score = 141 bits (156), Expect = 9e-29 Identities = 540/827 (65%), Gaps = 28/827 (3%) Strand=Plus/Plus Query 120348 GCGCTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTT 120407 ||||| ||||||| | || |||||||| |||||||| || || |||| ||| || | Sbjct 15862447 GCGCTGGTACTCGGCCACCTTCTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCAT 15862506 Query 120408 GTTCATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAG 120467 | ||| || | ||| || || | | ||| || || | || | || | || Sbjct 15862507 CTCCATGAAATTGAAAGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAG 15862566 Query 120468 CAGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGC-GTTCATGCCCAGCA 120526 ||| || || || || ||||| ||||||| | ||||| | | | ||||||||| | || Sbjct 15862567 CAGCCGATCGGCCACGAACTCGATGTACTGGGACATG-AGAACACAGTTCATGCCAATCA 15862625 Query 120527 ACGCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACA 120586 | || |||| || |||| ||||||| ||| || ||||| || ||| ||| | Sbjct 15862626 AATTGACGGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGA 15862685 Query 120587 TGGCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGC--GTTCGGTAGTACAGG-- 120642 | ||| || | | ||| |||| | || ||| | | | ||| |||| | Sbjct 15862686 TCTCGATGAT-GCGCTCCCG-----CTTGGGC-CGCTGCACTAGAT-GGTGATACATGAG 15862737 Query 120643 CAC-GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAG 120701 ||| |||||||| ||| || || ||||| || || |||||||||||| || ||||| Sbjct 15862738 CACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAG 15862797 Query 120702 GCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAA 120761 |||||||||| || | |||| | | || || | |||||||||||| |||||| Sbjct 15862798 ACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTAAAGAA 15862857 Query 120762 CACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTC 120821 | || |||||| |||||||| | || |||||||| || | |||| || | Sbjct 15862858 GATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGA 15862917 Query 120822 GATCCACTTCATGGCCCACTCGGCCTTTTTGCGC---ACGCACGGCATCCGCTCGAACGC 120878 ||||| ||||||||| || ||| |||||| || |||||| ||| | || Sbjct 15862918 TATCCAGGACATGGCCCAGTCCGCC---TTGCGCTTTACAGCCGGCATGGTCTCAATAGC 15862974 Query 120879 GTTCAGCAGCATGTCGCGCTCGCCCTCCT-CCGCAATCAGCTGATGGATGAGCAGATTGT 120937 || | || ||||||||| | || ||| | || || | ||||||| ||| Sbjct 15862975 ATTGAACAAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTG-TCAATGAGCACGCTGT 15863033 Query 120938 ACATTTCCGTGTGCACGCACTCGATCAGCACTTGCTGGTTGTAAAAGTACTGCGCCTCC- 120996 |||| || | |||||| ||| || | || | ||| ||| | | |||||| Sbjct 15863034 ACATCTCGGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCCG 15863093 Query 120997 AGCTCGGGCACCGCCCGCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCG 121056 | || ||||| || | | | ||||| || || || || || | ||| | | Sbjct 15863094 TGATC-TGCACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAG 15863152 Query 121057 GCGGCGAAGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTTGTGC 121116 || |||||||| || ||||| || |||||||| ||||||| ||| ||||| | || Sbjct 15863153 GCAGCGAAGAAGGCTAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAG-ACGGGC 15863211 Query 121117 GCAAAATCGTCATAGTCCTTGGACAGGTCGACCTCCTCCACCTTCCA 121163 | | |||| |||||| || || || ||||| ||||| |||| Sbjct 15863212 -CCAGTCCGTC-GCGTCCTTCGATAGATCCACCTCTTCCACGGTCCA 15863256 >seq1 Length=22123056 Score = 141 bits (156), Expect = 9e-29 Identities = 152/199 (76%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||| ||| || || ||| |||||| |||||||||| Sbjct 6630551 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGT--ACGTCCGTCCTCCAGCTGCTTGC 6630494 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | |||||||| || || || ||||| |||||||| |||||| || Sbjct 6630493 CGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCT 6630434 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| | |||||| || |||| ||||| ||| ||||| ||||| | Sbjct 6630433 TGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGG 6630374 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| |||||||||||||| Sbjct 6630373 TTTTCACGAAAATCTGCAT 6630355 >seq5 Length=28826359 Score = 102 bits (112), Expect = 8e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 148814 GTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTAC 148873 ||||| || || || |||| |||||| || || ||||||| || || |||||| || Sbjct 15307356 GTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATCAGGTGCTGAGTACTCGAC 15307297 Query 148874 GATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCT 148933 || || | || | ||| |||||||| || ||| || || | |||||||||||| || Sbjct 15307296 AATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCT 15307237 Query 148934 GTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTC 148987 ||||| | ||||| | |||||||| || ||||||||||| |||| ||| Sbjct 15307236 ATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCACTTGCGATTC 15307183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420763743440