Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq2 145 7e-30
seq4 141 9e-29
seq1 141 9e-29
seq5 102 8e-17
>seq2
Length=30136903
Score = 145 bits (160), Expect = 7e-30
Identities = 158/207 (76%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||| | || ||||| ||||| || ||||| || | ||| | | | ||||| ||
Sbjct 19092345 AAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCA-TCCTCCAG 19092403
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||||||||| ||| | ||||| ||||||||||| || ||||| || |||||||| |||
Sbjct 19092404 CTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGAT 19092463
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||| | | ||||| ||||||| |||||||| || | ||||| |||||| ||
Sbjct 19092464 CTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCC 19092523
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||||||| || ||||| ||||||||
Sbjct 19092524 GGTCAGAGTCTTCACGAATATCTGCAT 19092550
Score = 132 bits (146), Expect = 5e-26
Identities = 155/207 (75%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||| | || ||||| ||||| || ||||| || | ||| | | | ||||| ||
Sbjct 19092573 AAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCA-TCCTCCAG 19092631
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||||||||| ||| | ||||| ||||||||||| || ||||| || |||||||| |||
Sbjct 19092632 CTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGAT 19092691
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||| | | ||||| ||||||| |||||||| || | ||||| |||||| ||
Sbjct 19092692 CTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCC 19092751
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
|||| ||||| || || ||||||||
Sbjct 19092752 AGTCAAGGTTTTCACAAAGATCTGCAT 19092778
Score = 129 bits (142), Expect = 6e-25
Identities = 234/338 (69%), Gaps = 7/338 (2%)
Strand=Plus/Plus
Query 116467 GGCCTGCACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCC 116526
|| |||||||| ||||| ||||||||||| || |||| || ||||||||||| || ||
Sbjct 15750014 GGACTGCACGGATTCCATGTGCACGAGTTCGGGGACAACACCAACGGCTGCATGTCGTCC 15750073
Query 116527 GGCGAACACTTCAACCCCACCGG--CCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTC 116584
||| ||||| ||||| |||| | |||| ||||| || |||| || | || |
Sbjct 15750074 GGCCCCCACTTTAACCC--CCGGAACAAGGAGCACGGTGCCCCCACCGATGAGAACCGCC 15750131
Query 116585 ACGTCGGTGACCTGGGCAACATTGAGGCCAAAGTGTCCAACGCGCTCACTGCCGTGGACA 116644
|| | || ||| |||||||||| |||| | || || | ||| ||||| ||
Sbjct 15750132 ACTTGGGCGACTTGGGCAACATCCAGGCGGCCG-GT--GACAGCCCCACGGCCGTCAGCA 15750188
Query 116645 AGATCGACAACGTGATGACGCTGTTCGGCGAGTACAGCGTGCTCGGTCGCAGTCTCGTCG 116704
| |||| ||| ||||||||||| | ||||| | | || |||| | ||||
Sbjct 15750189 TCACCGACTCGAAGATCACGCTGTTCGGTGCCGACAGCATCATAGGACGCACCGTGGTCG 15750248
Query 116705 TGCACACCAACGCCGACGACCTGGGACTGGGCCAGCACCCGCTTAGCAAAACCACCGGCA 116764
| ||| || |||| || ||| |||| ||| ||| ||| ||||| ||||||||||
Sbjct 15750249 TCCACGCCGACGCTGATGACTTGGGCAAGGGTGGTCACGAGCTAAGCAAGACCACCGGCA 15750308
Query 116765 ACTCGGGCGGCCGCCTCGGCTGCGGCATTATCGGCATT 116802
| | |||| ||| | |||||||| | || ||||||
Sbjct 15750309 ATGCCGGCGCCCGTATTGGCTGCGGTGTCATTGGCATT 15750346
>seq4
Length=20862834
Score = 141 bits (156), Expect = 9e-29
Identities = 540/827 (65%), Gaps = 28/827 (3%)
Strand=Plus/Plus
Query 120348 GCGCTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTT 120407
||||| ||||||| | || |||||||| |||||||| || || |||| ||| || |
Sbjct 15862447 GCGCTGGTACTCGGCCACCTTCTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCAT 15862506
Query 120408 GTTCATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAG 120467
| ||| || | ||| || || | | ||| || || | || | || | ||
Sbjct 15862507 CTCCATGAAATTGAAAGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAG 15862566
Query 120468 CAGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGC-GTTCATGCCCAGCA 120526
||| || || || || ||||| ||||||| | ||||| | | | ||||||||| | ||
Sbjct 15862567 CAGCCGATCGGCCACGAACTCGATGTACTGGGACATG-AGAACACAGTTCATGCCAATCA 15862625
Query 120527 ACGCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACA 120586
| || |||| || |||| ||||||| ||| || ||||| || ||| ||| |
Sbjct 15862626 AATTGACGGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGA 15862685
Query 120587 TGGCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGC--GTTCGGTAGTACAGG-- 120642
| ||| || | | ||| |||| | || ||| | | | ||| |||| |
Sbjct 15862686 TCTCGATGAT-GCGCTCCCG-----CTTGGGC-CGCTGCACTAGAT-GGTGATACATGAG 15862737
Query 120643 CAC-GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAG 120701
||| |||||||| ||| || || ||||| || || |||||||||||| || |||||
Sbjct 15862738 CACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAG 15862797
Query 120702 GCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAA 120761
|||||||||| || | |||| | | || || | |||||||||||| ||||||
Sbjct 15862798 ACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTAAAGAA 15862857
Query 120762 CACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTC 120821
| || |||||| |||||||| | || |||||||| || | |||| || |
Sbjct 15862858 GATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGA 15862917
Query 120822 GATCCACTTCATGGCCCACTCGGCCTTTTTGCGC---ACGCACGGCATCCGCTCGAACGC 120878
||||| ||||||||| || ||| |||||| || |||||| ||| | ||
Sbjct 15862918 TATCCAGGACATGGCCCAGTCCGCC---TTGCGCTTTACAGCCGGCATGGTCTCAATAGC 15862974
Query 120879 GTTCAGCAGCATGTCGCGCTCGCCCTCCT-CCGCAATCAGCTGATGGATGAGCAGATTGT 120937
|| | || ||||||||| | || ||| | || || | ||||||| |||
Sbjct 15862975 ATTGAACAAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTG-TCAATGAGCACGCTGT 15863033
Query 120938 ACATTTCCGTGTGCACGCACTCGATCAGCACTTGCTGGTTGTAAAAGTACTGCGCCTCC- 120996
|||| || | |||||| ||| || | || | ||| ||| | | ||||||
Sbjct 15863034 ACATCTCGGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCCG 15863093
Query 120997 AGCTCGGGCACCGCCCGCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCG 121056
| || ||||| || | | | ||||| || || || || || | ||| | |
Sbjct 15863094 TGATC-TGCACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAG 15863152
Query 121057 GCGGCGAAGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTTGTGC 121116
|| |||||||| || ||||| || |||||||| ||||||| ||| ||||| | ||
Sbjct 15863153 GCAGCGAAGAAGGCTAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAG-ACGGGC 15863211
Query 121117 GCAAAATCGTCATAGTCCTTGGACAGGTCGACCTCCTCCACCTTCCA 121163
| | |||| |||||| || || || ||||| ||||| ||||
Sbjct 15863212 -CCAGTCCGTC-GCGTCCTTCGATAGATCCACCTCTTCCACGGTCCA 15863256
>seq1
Length=22123056
Score = 141 bits (156), Expect = 9e-29
Identities = 152/199 (76%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521
|||||||| ||||| || ||||| ||| || || ||| |||||| ||||||||||
Sbjct 6630551 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGT--ACGTCCGTCCTCCAGCTGCTTGC 6630494
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | || | |||||||| || || || ||||| |||||||| |||||| ||
Sbjct 6630493 CGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCT 6630434
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | ||| | ||||| | |||||| || |||| ||||| ||| ||||| ||||| |
Sbjct 6630433 TGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGG 6630374
Query 133642 TTTTTACGAAAATCTGCAT 133660
|||| ||||||||||||||
Sbjct 6630373 TTTTCACGAAAATCTGCAT 6630355
>seq5
Length=28826359
Score = 102 bits (112), Expect = 8e-17
Identities = 127/174 (73%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 148814 GTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTAC 148873
||||| || || || |||| |||||| || || ||||||| || || |||||| ||
Sbjct 15307356 GTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATCAGGTGCTGAGTACTCGAC 15307297
Query 148874 GATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCT 148933
|| || | || | ||| |||||||| || ||| || || | |||||||||||| ||
Sbjct 15307296 AATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCT 15307237
Query 148934 GTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTC 148987
||||| | ||||| | |||||||| || ||||||||||| |||| |||
Sbjct 15307236 ATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCACTTGCGATTC 15307183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483420763743440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |