Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 226 7e-54 >seq5 Length=28826359 Score = 226 bits (250), Expect = 7e-54 Identities = 479/707 (68%), Gaps = 12/707 (2%) Strand=Plus/Plus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 |||||||||| || || || || || ||| | ||| ||||| | ||||| | || Sbjct 15306432 ACTATTTTGGATTTAAGACGCTCGAGCGTTCCTATCTACTTAAGATAAATGGGAAAATTG 15306491 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 |||||||| ||||||||| | | || || || |||||||||||||| | |||||| Sbjct 15306492 CAGAACGTCCACAACACATGCTGATGCGCGTCGCTCTTGGTATTCATGGAGACGATATTG 15306551 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTA 110481 | || | | ||| ||| | || | | || | || ||||| | || | Sbjct 15306552 ATGCGGCAGTGGAAACTTACAACCTACTGTCTGAACGATACTTTACGCATGCCTCGCCAA 15306611 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTA 110541 | || ||| || | || ||| || |||||| | || || |||||| | ||| | Sbjct 15306612 CGCTTTTTGCTGCTGCTACAAATCGACCTCAATTGTCCTCGTGTTTTCTTTTGACAATGA 15306671 Query 110542 ACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAA 110601 | ||||| ||||||||||||| | | | || || || ||| || ||||| ||| Sbjct 15306672 ATTCGGATTCAATTGAAGGTATTTTTAAATCAGTTGAACAATGTGCACTGATTTCCAAAT 15306731 Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCA--AATATC-G 110658 | || ||||| || | | | |||||| ||||| | ||||| | ||||| | Sbjct 15306732 CAGCAGGTGGAATCGG-ACTAATGTTCATTGCATTCGTGCTAAAGGCACTTCAATATGTG 15306790 Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718 ||| ||| ||| | || | |||| | ||||||||||||||||| || || | | Sbjct 15306791 GAAC---GAACGGTACGTCGAATGGATTAGTTCCAATGTTAAGAGTTTTTAATAATGTGG 15306847 Query 110719 CAAAATATGTGAATCA---AGGTGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAAC 110775 | |||||| |||| |||||| || ||| ||| | |||||||| ||| | || | Sbjct 15306848 CTCGATATGTTGATCAGGGAGGTGGAAAAAGACCTGGTGCCTTTGCTATTTATTTAGAGC 15306907 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCA-AGGATTTGAAGAA 110834 | |||||||||||| | ||||| || |||| || || || || || ||| |||||| Sbjct 15306908 CCTGGCATTCAGATGTTTTTGAGTTTTTAG-ACCTCAAAAGAAACACTGGAAAAGAAGAA 15306966 Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894 | ||||||||||| | ||||| || | |||||| | ||| | ||||||||||||||| Sbjct 15306967 AACCGAGCACGTGATCTTTTTTACGCTTTATGGATTCCTGATCTTTTCATGAAACGTGTT 15307026 Query 110895 CAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTA 110954 | | ||||| | ||||| | |||||||| ||| | |||||| || ||||| Sbjct 15307027 GAGGCAAATGAAAGCTGGTCATTGATGTGTCCACATAAATGTCCTGGCCTTCAAGATGTT 15307086 Query 110955 TATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG 111001 | || || | |||||||| || || | |||||||| ||||||| Sbjct 15307087 TGGGGCGAAAAATTTGAAGAACTCTATGTCAAATATGAGCAAGAAGG 15307133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812708763766