Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 seq2 104 2e-17 seq1 87.8 1e-12 >seq5 Length=28826359 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 || ||||| | ||| ||| || || ||||| ||||| || ||||| || | || ||| Sbjct 15755909 ACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCC 15755968 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||| || || || || ||||||||||| |||||| | || | ||||||||||| Sbjct 15755969 AATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGG 15756028 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || | || |||| || | ||| || | ||| || |||| || || || || Sbjct 15756029 ATCTT-GGCTTTGACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTTATGGTCTT 15756087 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 || |||| || ||||||||||||||||| ||| Sbjct 15756088 GCCCGTTAGGGTCTTTACAAAGATCTGCATGGTT 15756121 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || | |||||| || || || ||| || || |||||||| ||||| Sbjct 28457452 ACCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 28457511 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || ||||| || |||| ||||||||||||| | || Sbjct 28457512 CAGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGG 28457571 Query 33642 CACACCTTCTTTGTC 33656 | || || ||||| Sbjct 28457572 AATGCCCTCCTTGTC 28457586 >seq2 Length=30136903 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| ||||| ||| || || |||||||| || || Sbjct 19092551 ACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 19092610 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || ||||| || || | ||||||||| || | || Sbjct 19092611 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGG 19092670 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || || ||||| || || |||| | | ||| ||||||| || |||| Sbjct 19092671 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTCTCAATGGTGTCGGATGGCTCCA 19092729 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| ||||| || || || ||||| |||||||||||||| Sbjct 19092730 CCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 19092778 >seq1 Length=22123056 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || ||||| || | |||| ||| || || |||||||| ||||| | || ||| | Sbjct 6630570 ACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCC 6630511 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| |||| || || ||||| || |||||||||||||||||| | || | || || || Sbjct 6630510 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTT 6630451 Query 33654 GTC 33656 ||| Sbjct 6630450 GTC 6630448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703975963520