Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 2e-15 seq2 91.5 3e-13 seq1 89.7 1e-12 >seq5 Length=28826359 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| ||||| || || |||||||| |||| Sbjct 28457664 AAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTCTGACACCATCGAGAAT 28457605 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || || || | || |||||| Sbjct 28457604 GTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTTC 28457545 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | ||| || |||| |||||| ||||||| ||||| Sbjct 28457544 GCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCG 28457485 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 28457484 ACCCTGCAC 28457476 >seq2 Length=30136903 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| | || |||||||| ||||| |||| ||||| Sbjct 19092781 AAAATG---CAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAG 19092725 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || ||||| | || || ||| ||||| || || || || ||||| || Sbjct 19092724 CCATCCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCT 19092665 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || | || ||||||||||| |||||| |||| ||||| | ||| | | || Sbjct 19092664 GACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGAC 19092605 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||||| ||||||| ||||| ||||| || Sbjct 19092604 TACAACATCCAGAAGGAGTCGACTCTCCA 19092576 >seq1 Length=22123056 Score = 89.7 bits (98), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 206161 GCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTG 206220 || |||||| ||||| || ||||| || || || || || ||||| | || || Sbjct 6630349 GCCAAAATG---CAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTT 6630405 Query 206221 GAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTG 206280 || || ||||| |||| || ||| ||||| || || || || || ||| Sbjct 6630406 GAGCCCTCGGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCC 6630465 Query 206281 CCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCC 206340 || || || | | ||||||||||| |||||| |||| || ||| | |||||| || Sbjct 6630466 CCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCC 6630525 Query 206341 GATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| ||||||| ||||| ||| | ||| | || ||| | ||||| Sbjct 6630526 GACTACAACATCCAGAAGGAGTCCACTTTGCACTTGGTATTGCGTCTTCG 6630575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820709147526