Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5 212 6e-50 seq2 116 4e-21 seq1 91.5 1e-13 >seq5 Length=28826359 Score = 212 bits (234), Expect = 6e-50 Identities = 841/1304 (64%), Gaps = 37/1304 (3%) Strand=Plus/Minus Query 146551 ACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTG 146610 ||||| |||||| || || || |||||||||||||| ||||| ||||| || ||||| Sbjct 15308255 ACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCCGGTTTTT 15308196 Query 146611 AGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCC 146670 || ||| | ||| ||| | || || || |||| | |||| | ||||| || Sbjct 15308195 AGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGGCTCTGCT 15308136 Query 146671 ACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCA 146730 ||| || ||||||||| || |||||||| || || || | || || ||||| | | Sbjct 15308135 ACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCATTTTA 15308076 Query 146731 ATCATGCGTTTTGTCTTCATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGA 146790 || || |||| |||||||| | ||||| || || | ||| | | ||| Sbjct 15308075 ATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCGAACCTTTTGGGGA 15308016 Query 146791 ATACCTTCAATGTTTTGAATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGTATTTCGGGC 146850 ||| |||||| | |||||| |||||| || | || || | ||| || || Sbjct 15308015 ATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAAATTATTTTATTTTTCATCTCATCA 15307956 Query 146851 GTGTAAAGGTTTA-----GTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAA 146905 | | || | ||| ||| | ||||| |||| |||||||||||||||| Sbjct 15307955 TCCCATAAGTCCAACTCTGTTAAATC----CCTCAAT-AAATGATGATTGACCACTTGAA 15307901 Query 146906 ACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCAT 146965 | || || | | || ||||| ||| | ||| | || | || || || || || | Sbjct 15307900 ATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGATTCGT 15307841 Query 146966 TATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTC 147025 |||| || | ||||| || || | ||| |||||||| ||| || ||||| ||||| | Sbjct 15307840 TATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAATTCC 15307781 Query 147026 GCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCG 147085 | |||| | |||| || |||| ||||||| ||||| | || || | Sbjct 15307780 TAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGCCAATCCCATAGGTTCGTTGGAG 15307721 Query 147086 TCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAG 147145 | | |||||| || || || || | |||| || | ||||| || | | || Sbjct 15307720 TTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGACTTCCTTCATAGGTTT 15307661 Query 147146 TGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGG 147205 || || || || | |||||| || || || || |||||| | || || | Sbjct 15307660 CATATGGACCAAATGCTTGAGCAAGTTCACAACTAGCTTCTAGAGCTCCAAAATAAATTG 15307601 Query 147206 TTTCGGCGATTTGTTTGTTTAG--GACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAG 147263 |||| ||||||| ||||| ||| | ||||||||||| || || || | ||||| Sbjct 15307600 TTTCAAATATTTGTTGGTTTAAAAGACCG--GCTTCTTCGCTTTCATAGGGAAAACGCAT 15307543 Query 147264 AAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTT 147323 | | || || || || | ||| || ||||| | ||||| || |||||| || || Sbjct 15307542 TAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCCTTAAATT 15307483 Query 147324 GCTGCGCTTCGC-GCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTAC 147382 | ||| || || || | ||| || | |||| || ||||| ||||| || || Sbjct 15307482 GGACTTCTTGGCTTCTGGCAAAGGG-TAATAGTTGATGTCTATAATTTTGTTAAGATTTT 15307424 Query 147383 GCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACAC 147442 | ||| ||| |||| | ||| | ||| | ||||||||| || | ||| | Sbjct 15307423 TGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGT---TTTTTCTGCTG 15307367 Query 147443 GTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGC 147502 |||| | ||||| || || || || | ||||||||| || |||| || | || || Sbjct 15307366 TTACGAACATGTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATCAG-GT-GC 15307309 Query 147503 T--GTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAA-ATTTTGCT 147559 | ||||| || ||||| | || | || |||||||| || | | |||| |||||| | Sbjct 15307308 TGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAAT-AGTGCCAACATTTTGTT 15307250 Query 147560 GATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTT 147619 ||||||| || | |||||| | || || || |||||||| || || || || |||| Sbjct 15307249 GATTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCACTT 15307190 Query 147620 GCGTTTC---AACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGAT---AGC 147673 ||| ||| || | ||||| || || |||| ||| || | | | |||| | Sbjct 15307189 GCGATTCTATAATGGCAAACC-ATAAAG--CCTGGGCTTCCA-CTGTT--CGATTCGCAC 15307136 Query 147674 GGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAA 147733 | || || | || || | || | ||||| | ||||| | ||| || Sbjct 15307135 GTCCTTCTTGCTCATATTTGACATAGAGTTCTTCAAATTTTTCGCCCCAAACATCTTGAA 15307076 Query 147734 GGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCA 147793 |||| ||||| | ||| |||||||||| ||||| | || | || | ||| ||| || Sbjct 15307075 GGCCAGGACATTTATGTGGACACATCAATGACCAGCTTTCATTTGCCTCAACACGTTTCA 15307016 Query 147794 TAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCT 147837 | || ||||| || | ||| | ||||| | |||||| || ||| Sbjct 15307015 TGAAAAGATCAGGAATCCATAAAGCGTAAAAAAGATCACGTGCT 15306972 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 148255 TCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCG 148314 || || ||||| || ||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct 15306552 TCAATATCGTCTCCATGAATACCAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCT 15306493 Query 148315 GCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTAC 148374 |||| || || ||||| || ||||| | ||||| || || | ||||| || Sbjct 15306492 GCAATTTTCCCATTTATCTTAAGTAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAG 15306433 Query 148375 TTGTAATCAAAATCTAGCTCGTAA 148398 || ||| |||||||| | || ||| Sbjct 15306432 TTATAACCAAAATCTCGGTCATAA 15306409 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||| | ||||| || | | | ||||| || || |||||||||||| || || Sbjct 28457459 CGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 28457518 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||| || ||||| ||||||| |||| |||||||| |||||||| || ||||| Sbjct 28457519 CGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCC 28457578 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || || | | || | || || | ||||| || || | Sbjct 28457579 TCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAG 28457638 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||| |||||||| | ||| || ||||| Sbjct 28457639 GTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 28457679 >seq2 Length=30136903 Score = 116 bits (128), Expect = 4e-21 Identities = 240/349 (69%), Gaps = 10/349 (3%) Strand=Plus/Minus Query 51541 CAATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCG 51600 |||| || |||| |||||||| | ||| |||| | ||||| ||||||||||| ||| Sbjct 15750347 CAATGCCAATGACACCGCAGCCAATACGGGCGCCGGCATTGCCGGTGGTCTTGCTTAGCT 15750288 Query 51601 GATGGTCGGTGAGGCCGAGATCGTC-GCGCTTTGCGTGAACCACCAGACTGCGGCCAACG 51659 || | ||| | || || ||| | ||||| || |||| |||| || | | Sbjct 15750287 CGTGACCACCCTTGCCCAAGTCATCAGCG-TCGGCGTGGACGACCACGGTGCGTCCTATG 15750229 Query 51660 ACGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCG 51719 | ||| | | ||||| ||||| ||| |||| | || || | ||| || | Sbjct 15750228 ATGCTGTCGGCACCGAACAGCGTGATCTTCGAGTCGGTGATGCTGACGGCCGTGGGGCTG 15750169 Query 51720 TTGGACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGA 51779 | || | |||| || |||||||||||||| | |||||| || | || | || Sbjct 15750168 TC--AC-CGGCCGCCTGGATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCATCGGTGGGG 15750112 Query 51780 GCGCCGTGGTCGCTG--CCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGC 51837 || ||||| || || |||| ||||| ||||| ||| | |||| ||||||||||| Sbjct 15750111 GCACCGTGCTCCTTGTTCCGG--GGGTTAAAGTGGGGGCCGGACGACATGCAGCCGTTGG 15750054 Query 51838 TGGTGTCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCCCCTCGGCAA 51886 || |||| ||||| |||||||| ||||||||||||| | |||| ||||| Sbjct 15750053 TGTTGTCCCCGAACTCGTGCACATGGAATCCGTGCA-GTCCCTTGGCAA 15750006 >seq1 Length=22123056 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | ||||| || || |||||||||||| || ||||| Sbjct 6630569 CGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCG 6630510 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| |||| | |||||| |||||||| || ||||| || || Sbjct 6630509 TCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTG 6630450 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | || | || || | ||||| || |||| || | Sbjct 6630449 TCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATG 6630390 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| ||||| | |||||||||||| Sbjct 6630389 GTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 6630355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611164254160