Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq5 212 6e-50
seq2 116 4e-21
seq1 91.5 1e-13
>seq5
Length=28826359
Score = 212 bits (234), Expect = 6e-50
Identities = 841/1304 (64%), Gaps = 37/1304 (3%)
Strand=Plus/Minus
Query 146551 ACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTG 146610
||||| |||||| || || || |||||||||||||| ||||| ||||| || |||||
Sbjct 15308255 ACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCCGGTTTTT 15308196
Query 146611 AGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCC 146670
|| ||| | ||| ||| | || || || |||| | |||| | ||||| ||
Sbjct 15308195 AGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGGCTCTGCT 15308136
Query 146671 ACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCA 146730
||| || ||||||||| || |||||||| || || || | || || ||||| | |
Sbjct 15308135 ACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCATTTTA 15308076
Query 146731 ATCATGCGTTTTGTCTTCATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGA 146790
|| || |||| |||||||| | ||||| || || | ||| | | |||
Sbjct 15308075 ATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCGAACCTTTTGGGGA 15308016
Query 146791 ATACCTTCAATGTTTTGAATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGTATTTCGGGC 146850
||| |||||| | |||||| |||||| || | || || | ||| || ||
Sbjct 15308015 ATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAAATTATTTTATTTTTCATCTCATCA 15307956
Query 146851 GTGTAAAGGTTTA-----GTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAA 146905
| | || | ||| ||| | ||||| |||| ||||||||||||||||
Sbjct 15307955 TCCCATAAGTCCAACTCTGTTAAATC----CCTCAAT-AAATGATGATTGACCACTTGAA 15307901
Query 146906 ACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCAT 146965
| || || | | || ||||| ||| | ||| | || | || || || || || |
Sbjct 15307900 ATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGATTCGT 15307841
Query 146966 TATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTC 147025
|||| || | ||||| || || | ||| |||||||| ||| || ||||| ||||| |
Sbjct 15307840 TATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAATTCC 15307781
Query 147026 GCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCG 147085
| |||| | |||| || |||| ||||||| ||||| | || || |
Sbjct 15307780 TAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGCCAATCCCATAGGTTCGTTGGAG 15307721
Query 147086 TCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAG 147145
| | |||||| || || || || | |||| || | ||||| || | | ||
Sbjct 15307720 TTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGACTTCCTTCATAGGTTT 15307661
Query 147146 TGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGG 147205
|| || || || | |||||| || || || || |||||| | || || |
Sbjct 15307660 CATATGGACCAAATGCTTGAGCAAGTTCACAACTAGCTTCTAGAGCTCCAAAATAAATTG 15307601
Query 147206 TTTCGGCGATTTGTTTGTTTAG--GACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAG 147263
|||| ||||||| ||||| ||| | ||||||||||| || || || | |||||
Sbjct 15307600 TTTCAAATATTTGTTGGTTTAAAAGACCG--GCTTCTTCGCTTTCATAGGGAAAACGCAT 15307543
Query 147264 AAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTT 147323
| | || || || || | ||| || ||||| | ||||| || |||||| || ||
Sbjct 15307542 TAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCCTTAAATT 15307483
Query 147324 GCTGCGCTTCGC-GCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTAC 147382
| ||| || || || | ||| || | |||| || ||||| ||||| || ||
Sbjct 15307482 GGACTTCTTGGCTTCTGGCAAAGGG-TAATAGTTGATGTCTATAATTTTGTTAAGATTTT 15307424
Query 147383 GCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACAC 147442
| ||| ||| |||| | ||| | ||| | ||||||||| || | ||| |
Sbjct 15307423 TGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGT---TTTTTCTGCTG 15307367
Query 147443 GTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGC 147502
|||| | ||||| || || || || | ||||||||| || |||| || | || ||
Sbjct 15307366 TTACGAACATGTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATCAG-GT-GC 15307309
Query 147503 T--GTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAA-ATTTTGCT 147559
| ||||| || ||||| | || | || |||||||| || | | |||| |||||| |
Sbjct 15307308 TGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAAT-AGTGCCAACATTTTGTT 15307250
Query 147560 GATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTT 147619
||||||| || | |||||| | || || || |||||||| || || || || ||||
Sbjct 15307249 GATTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCACTT 15307190
Query 147620 GCGTTTC---AACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGAT---AGC 147673
||| ||| || | ||||| || || |||| ||| || | | | |||| |
Sbjct 15307189 GCGATTCTATAATGGCAAACC-ATAAAG--CCTGGGCTTCCA-CTGTT--CGATTCGCAC 15307136
Query 147674 GGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAA 147733
| || || | || || | || | ||||| | ||||| | ||| ||
Sbjct 15307135 GTCCTTCTTGCTCATATTTGACATAGAGTTCTTCAAATTTTTCGCCCCAAACATCTTGAA 15307076
Query 147734 GGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCA 147793
|||| ||||| | ||| |||||||||| ||||| | || | || | ||| ||| ||
Sbjct 15307075 GGCCAGGACATTTATGTGGACACATCAATGACCAGCTTTCATTTGCCTCAACACGTTTCA 15307016
Query 147794 TAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCT 147837
| || ||||| || | ||| | ||||| | |||||| || |||
Sbjct 15307015 TGAAAAGATCAGGAATCCATAAAGCGTAAAAAAGATCACGTGCT 15306972
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 148255 TCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCG 148314
|| || ||||| || ||||| || || ||||||||||| |||||||| ||||| |||||
Sbjct 15306552 TCAATATCGTCTCCATGAATACCAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCT 15306493
Query 148315 GCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTAC 148374
|||| || || ||||| || ||||| | ||||| || || | ||||| ||
Sbjct 15306492 GCAATTTTCCCATTTATCTTAAGTAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAG 15306433
Query 148375 TTGTAATCAAAATCTAGCTCGTAA 148398
|| ||| |||||||| | || |||
Sbjct 15306432 TTATAACCAAAATCTCGGTCATAA 15306409
Score = 87.8 bits (96), Expect = 2e-12
Identities = 152/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
|||| ||| | ||||| || | | | ||||| || || |||||||||||| || ||
Sbjct 28457459 CGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 28457518
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
|| ||| || ||||| ||||||| |||| |||||||| |||||||| || |||||
Sbjct 28457519 CGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCC 28457578
Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082
|| || || || || || | | || | || || | ||||| || || |
Sbjct 28457579 TCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAG 28457638
Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | || || ||||| |||||||| | ||| || |||||
Sbjct 28457639 GTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 28457679
>seq2
Length=30136903
Score = 116 bits (128), Expect = 4e-21
Identities = 240/349 (69%), Gaps = 10/349 (3%)
Strand=Plus/Minus
Query 51541 CAATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCG 51600
|||| || |||| |||||||| | ||| |||| | ||||| ||||||||||| |||
Sbjct 15750347 CAATGCCAATGACACCGCAGCCAATACGGGCGCCGGCATTGCCGGTGGTCTTGCTTAGCT 15750288
Query 51601 GATGGTCGGTGAGGCCGAGATCGTC-GCGCTTTGCGTGAACCACCAGACTGCGGCCAACG 51659
|| | ||| | || || ||| | ||||| || |||| |||| || | |
Sbjct 15750287 CGTGACCACCCTTGCCCAAGTCATCAGCG-TCGGCGTGGACGACCACGGTGCGTCCTATG 15750229
Query 51660 ACGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCG 51719
| ||| | | ||||| ||||| ||| |||| | || || | ||| || |
Sbjct 15750228 ATGCTGTCGGCACCGAACAGCGTGATCTTCGAGTCGGTGATGCTGACGGCCGTGGGGCTG 15750169
Query 51720 TTGGACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGA 51779
| || | |||| || |||||||||||||| | |||||| || | || | ||
Sbjct 15750168 TC--AC-CGGCCGCCTGGATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCATCGGTGGGG 15750112
Query 51780 GCGCCGTGGTCGCTG--CCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGC 51837
|| ||||| || || |||| ||||| ||||| ||| | |||| |||||||||||
Sbjct 15750111 GCACCGTGCTCCTTGTTCCGG--GGGTTAAAGTGGGGGCCGGACGACATGCAGCCGTTGG 15750054
Query 51838 TGGTGTCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCCCCTCGGCAA 51886
|| |||| ||||| |||||||| ||||||||||||| | |||| |||||
Sbjct 15750053 TGTTGTCCCCGAACTCGTGCACATGGAATCCGTGCA-GTCCCTTGGCAA 15750006
>seq1
Length=22123056
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| ||||| || | | ||||| || || |||||||||||| || |||||
Sbjct 6630569 CGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCG 6630510
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|| || ||||| || |||| |||| | |||||| |||||||| || ||||| || ||
Sbjct 6630509 TCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTG 6630450
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| || || || | | || | || || | ||||| || |||| || |
Sbjct 6630449 TCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATG 6630390
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| || |||||||| ||||| | ||||||||||||
Sbjct 6630389 GTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 6630355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476611164254160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |