Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq5 156 4e-33 >seq5 Length=28826359 Score = 156 bits (172), Expect = 4e-33 Identities = 552/851 (65%), Gaps = 21/851 (2%) Strand=Plus/Minus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 || || ||||| |||| || ||||||||||| || | | ||||||||| || || ||| Sbjct 15308255 ACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATTCCGGTTTTT 15308196 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758 | || | |||||| || |||||| |||| ||| || ||| | || || || Sbjct 15308195 AGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGGCTCTGCT 15308136 Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818 ||| || ||| | ||| || || ||||| || | | || | || || ||||| || Sbjct 15308135 ACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCATTTT- 15308077 Query 136819 AATAGTACTTTTTGCTTAA-TTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGG 136877 ||| || |||| || || ||||||| | |||||| | || || || || | || Sbjct 15308076 AATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCGAACCTTTTGGGG 15308017 Query 136878 AATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGATTTTCAT---CATGAGATC 136934 ||| || |||| || | || || || | || ||||| | ||| ||| Sbjct 15308016 AATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAAATTATTTTATTTTTCATCTCATC 15307957 Query 136935 AGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACTTGATA 136994 | | | || || |||| | | | | | ||| ||||| || |||||| | Sbjct 15307956 ATCCCA---TAAGTCCAACTCTGTTAAATCCCTCAATAAATGATGATTGACCACTTGAAA 15307900 Query 136995 TTCGCCCGATAGCACTCTGC--GTACGTACAGATTACTAGTGAACGGCTCGAACGATTCG 137052 ||| || |||| |||| | ||| || | ||| | || | || ||||| |||||| Sbjct 15307899 TTCACCAGATAATACTCGTCTCGTA--TAAATATTTGTGGTATATGGTTCGAATGATTCG 15307842 Query 137053 TTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTC 137112 || ||||||| ||| |||||||| | ||||| ||||| || | ||||| |||||| Sbjct 15307841 TTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAATTC 15307782 Query 137113 CGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGATTGTTCGAT 137172 | | ||||| | | || || || || ||| | ||| || ||||| | Sbjct 15307781 CTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGCCAATCCCATAG---GTTCGTT 15307725 Query 137173 TGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCATAA 137232 | ||| ||| ||||| |||| | || | || ||| ||| |||||||| || |||| Sbjct 15307724 GGAGTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGACTTCCTTCATAG 15307665 Query 137233 GAATCATATGTTCCG--TGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCATAGT 137290 | ||||||| || ||| || || |||||| ||| |||| || ||| | | Sbjct 15307664 GTTTCATATGGACCAAATGC--TTGAGCAAGTTCACAACTAGCTTCTAGAGCTCCAAAAT 15307607 Query 137291 AAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATAT 137350 |||| ||||| | |||| | || || | ||||||| ||| || ||||| | | Sbjct 15307606 AAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAAC 15307547 Query 137351 CCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTGTTTAA 137410 || || | ||||| || || || ||||||||||| |||||||| || | || | | Sbjct 15307546 GCATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCCTTA 15307487 Query 137411 AATTTGA-TATTTGAGCGCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCTATTGAGA 137469 |||| || | ||| || ||| || ||| |||| |||||||||| | || ||| Sbjct 15307486 AATTGGACTTCTTGGCTTCTGGCAA-AGGGTAATAGTTGATGTCTATAATTTTGTTAAGA 15307428 Query 137470 TTGTTAGTAAC 137480 || || | ||| Sbjct 15307427 TTTTTGGCAAC 15307417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445094366617920