Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq5 161 1e-34 >seq5 Length=28826359 Score = 161 bits (178), Expect = 1e-34 Identities = 241/341 (71%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 146842 AAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGTTC 146901 ||||| || |||| ||| ||| | | | || || ||||| || || || || || || Sbjct 2480112 AAATCTTCAATGTTCTCAACCTGTCGCTTGATGTTCAGCTTTGGAAACGGCCGCGGCTTG 2480171 Query 146902 CTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGG 146961 | |||||| ||||| || || || ||||| || || || || ||||| |||| | Sbjct 2480172 CGTTTCAGCTGCTCCTTCAGTGGATCAACATGGTTAAGATACACATGAGCGTCGCCCATG 2480231 Query 146962 GTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGC 147021 ||||| | |||||| |||| ||| | ||| || || ||||| | ||||||||| ||||| Sbjct 2480232 GTGTGGATAAAGTCGCCCGTCTTCAAGCCAGTTACATGGGCTATCATGTAGGTCAGCAGG 2480291 Query 147022 GAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGC 147081 | |||| || |||||||| || || || ||||||||||| | | ||| |||||| Sbjct 2480292 GCGTAGGATGCGATGTTGAATGGCACGCCAAGGCCCATGTCGGCGCTGCGCTGATACAGC 2480351 Query 147082 TGGCACGAGAGCTCCCC----GTCGGC--CACGTAAAACTGGCACAGGATGTGGCACGGC 147135 ||||| || ||||| || ||| || ||||| ||||| ||| ||||| ||| Sbjct 2480352 TGGCAGGACAGCTCTCCGCGGGTCTGCGAGACGTAGAACTGTGCCAGACAATGGCAGGGC 2480411 Query 147136 GGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGA 147176 || || ||||| ||| | |||| ||| ||||| || || Sbjct 2480412 GGGAGTGCCATTTTGGGTATGTCCAGGGGATTCCATGCAGA 2480452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583487956238400