Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq4 158 2e-32
seq2 147 3e-29
>seq4
Length=20862834
Score = 158 bits (174), Expect = 2e-32
Identities = 329/483 (68%), Gaps = 8/483 (2%)
Strand=Plus/Minus
Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT--CGGCGCCGACACGGTCCA 1455853
|||| ||||||||||| ||||||| || ||||| || || || | ||| || |
Sbjct 15863273 AGGCGGAGGCCTCCTTCTGGACCGTGGAAGAGGTGGATCTATCGAAG--GACGCGACGGA 15863216
Query 1455854 CTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913
||||| || | ||| |||||||| | || ||| || || || ||||| || ||
Sbjct 15863215 CTGGGCCCGTCTCACTGACAACGAGCGCTACTTTATCTCCCATGTGCTAGCCTTCTT-CG 15863157
Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973
| ||| || ||||| || |||||| |||| || ||||||| | ||||| ||
Sbjct 15863156 CTGCCTCGGACGGCATTGTTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGA 15863097
Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033
| | |||||||||| || ||||| |||||||| ||||| || || | ||||| || |
Sbjct 15863096 TCACGGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGA 15863037
Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTC 1456093
||| | || || ||||||||| | ||| ||| ||| ||| || | ||
Sbjct 15863036 TGTACAGCGTGCTCATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTCA 15862977
Query 1456094 GCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCA 1456153
|| || || || ||||| | || | | ||||| |||||||| ||| ||||| |
Sbjct 15862976 ATGCTATTGAGACCATGCCGGCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCTGGAT-A 15862918
Query 1456154 ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCAT 1456212
| || | | | ||||||||||||| | | | |||||| || || || || ||
Sbjct 15862917 TCCTCGAAATCGGCCA-ACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAAT 15862859
Query 1456213 CTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272
||| || ||||| || | | ||||||||||| |||||||| || |||||||||||
Sbjct 15862858 CTTCTTTAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGG 15862799
Query 1456273 TCT 1456275
|||
Sbjct 15862798 TCT 15862796
>seq2
Length=30136903
Score = 147 bits (162), Expect = 3e-29
Identities = 244/347 (70%), Gaps = 4/347 (1%)
Strand=Plus/Minus
Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931
|||||||| ||||| || || || | | |||||||| | || || | |||||||
Sbjct 23070355 AAGCGCAGCATGGCGCAGCGCGATTGTATCGGCTCGATGATC-TTCTCGCTGGTGTTGCA 23070297
Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGGCCTGTT 332990
||||||||| || || ||||| ||| | | | |||||||| ||| || || ||||| |
Sbjct 23070296 GGCCAGGGCGAAGCGAGTCGTGTTGCTGTAGATCTCCATGGTGCGA-CGCAGCGCCTGCT 23070238
Query 332991 GGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCG 333050
|||| || ||| | || ||| |||||||| ||||| | ||||||||| || || | |
Sbjct 23070237 GGGCGCCCTCCGTCATGCTGTCCGCCTCGTCCAGGATAACGATCTTGTGACGGCCCTTGG 23070178
Query 333051 GCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGC 333110
| || ||| ||| | ||| ||||| | |||||||| || || | ||| |
Sbjct 23070177 GTAGCGTCACCTTTTGCTGGGCAAACATCTTGATCTTGTTGCGCACCACATCGATGCCAC 23070118
Query 333111 GCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGC 333170
|||||| ||| || || || || ||||| ||||| | | | | || | |||| ||
Sbjct 23070117 GCTCGTTCGAGGCATTCAGCTCCAGCACTGCCTCCTTGTAGCTGTCTCCGAGCAGGATGC 23070058
Query 333171 GCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217
| ||||||||| ||| ||||||||||||| ||| || ||||||
Sbjct 23070057 GGGCCAGGCACTGAATGGTCGTGGTCTTGCCAACGCCAGGAGGACCC 23070011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177810621288972
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |