Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 158 2e-32 seq2 147 3e-29 >seq4 Length=20862834 Score = 158 bits (174), Expect = 2e-32 Identities = 329/483 (68%), Gaps = 8/483 (2%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT--CGGCGCCGACACGGTCCA 1455853 |||| ||||||||||| ||||||| || ||||| || || || | ||| || | Sbjct 15863273 AGGCGGAGGCCTCCTTCTGGACCGTGGAAGAGGTGGATCTATCGAAG--GACGCGACGGA 15863216 Query 1455854 CTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913 ||||| || | ||| |||||||| | || ||| || || || ||||| || || Sbjct 15863215 CTGGGCCCGTCTCACTGACAACGAGCGCTACTTTATCTCCCATGTGCTAGCCTTCTT-CG 15863157 Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973 | ||| || ||||| || |||||| |||| || ||||||| | ||||| || Sbjct 15863156 CTGCCTCGGACGGCATTGTTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGA 15863097 Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 | | |||||||||| || ||||| |||||||| ||||| || || | ||||| || | Sbjct 15863096 TCACGGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGA 15863037 Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTC 1456093 ||| | || || ||||||||| | ||| ||| ||| ||| || | || Sbjct 15863036 TGTACAGCGTGCTCATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTCA 15862977 Query 1456094 GCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCA 1456153 || || || || ||||| | || | | ||||| |||||||| ||| ||||| | Sbjct 15862976 ATGCTATTGAGACCATGCCGGCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCTGGAT-A 15862918 Query 1456154 ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCAT 1456212 | || | | | ||||||||||||| | | | |||||| || || || || || Sbjct 15862917 TCCTCGAAATCGGCCA-ACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAAT 15862859 Query 1456213 CTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||| || ||||| || | | ||||||||||| |||||||| || ||||||||||| Sbjct 15862858 CTTCTTTAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGG 15862799 Query 1456273 TCT 1456275 ||| Sbjct 15862798 TCT 15862796 >seq2 Length=30136903 Score = 147 bits (162), Expect = 3e-29 Identities = 244/347 (70%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931 |||||||| ||||| || || || | | |||||||| | || || | ||||||| Sbjct 23070355 AAGCGCAGCATGGCGCAGCGCGATTGTATCGGCTCGATGATC-TTCTCGCTGGTGTTGCA 23070297 Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGGCCTGTT 332990 ||||||||| || || ||||| ||| | | | |||||||| ||| || || ||||| | Sbjct 23070296 GGCCAGGGCGAAGCGAGTCGTGTTGCTGTAGATCTCCATGGTGCGA-CGCAGCGCCTGCT 23070238 Query 332991 GGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCG 333050 |||| || ||| | || ||| |||||||| ||||| | ||||||||| || || | | Sbjct 23070237 GGGCGCCCTCCGTCATGCTGTCCGCCTCGTCCAGGATAACGATCTTGTGACGGCCCTTGG 23070178 Query 333051 GCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGC 333110 | || ||| ||| | ||| ||||| | |||||||| || || | ||| | Sbjct 23070177 GTAGCGTCACCTTTTGCTGGGCAAACATCTTGATCTTGTTGCGCACCACATCGATGCCAC 23070118 Query 333111 GCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGC 333170 |||||| ||| || || || || ||||| ||||| | | | | || | |||| || Sbjct 23070117 GCTCGTTCGAGGCATTCAGCTCCAGCACTGCCTCCTTGTAGCTGTCTCCGAGCAGGATGC 23070058 Query 333171 GCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 | ||||||||| ||| ||||||||||||| ||| || |||||| Sbjct 23070057 GGGCCAGGCACTGAATGGTCGTGGTCTTGCCAACGCCAGGAGGACCC 23070011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177810621288972